Search result

BaseInfo

ncRNA ID novel_gar_miR1337
Species Gossypium arboreum
Class miRNA
Genome position Chr11:79098572-79098796 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180715
Length 24
Mature sequence(if miRNA) 1 - GAGAAGAGAUUGUAUGAAACUGUG - 24
Stem-loop(if miRNA) --      A      A           U    C U         UA     C    G           A    CU    -A               A     -AG     UUUG
  GAGAAG GAUUGU UGAAACUGUGA UACA G CAUCCUUAU  CUUUC AAUA GAGAAUGAUAA UUUA  UUUU  CUCUUGAUUUUUAGC UUUUU   UUGGA    A
  |||||| |||||| ||||||||||| |||| | |||||||||  ||||| |||| ||||||||||| ||||  ||||  ||||||||||||||| |||||   |||||
  CUCUUU CUAACA ACUUUGACAUU AUGU C GUAGGGAUA  GAAAG UUGU CUCUUGCUGUU AAGU  AAAA  GAGGAUUAAAAGUCG AAAGG   AACUU    A
UA      C      C           C    A U         GG     A    A           -    UU    AG               G     GAG     UUUU
Stem-loop sequence GAGAAGAGAUUGUAUGAAACUGUGAUUACACGUCAUCCUUAUUACUUUCCAAUAGGAGAAUGAUAAAUUUACUUUUUACUCUUGAUUUUUAGCAUUUUUAGUUGGAUUUGAAUUUUUUCAAGAGGGAAAGGCUGAAAAUUAGGAGGAAAAAUUUGAAUUGUCGUUCUCAUGUUAGAAAGGGAUAGGGAUGUCAUGUACUUACAGUUUCACACAAUCCUUUCUCAU