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BaseInfo

ncRNA ID	novel_gar_miR1330
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr4:8149864-8150063 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180715
Length	24
Mature sequence(if miRNA)	1 - AAUAUAGGGACUAAUUGUAUAAUU - 24
Stem-loop(if miRNA)	--         A               -----                               AUUCUUUUAACUUUCUUUUUUUUUUCUUUAUUUUCCAUU   UUAUACAAU GGUCCCUAUAUUUUU     CGUUUUGAGCAAUUUAAUUUUUUUCUUUUAU                                       C   ||||||||| |||||||||||||||     |||||||||||||||||||||||||||||||                                       U   AAUAUGUUA UCAGGGAUAUAAAAA     GCAAAACUCGUUAAAUUAAAAAAAGAAAAUG                                       C UU         A               AAAAU                               CAUCUACCUCUUCCCUUCUUUUAUCUCCCUCUUCGUUUU
Stem-loop sequence	UUAUACAAUAGGUCCCUAUAUUUUUCGUUUUGAGCAAUUUAAUUUUUUUCUUUUAUAUUCUUUUAACUUUCUUUUUUUUUUCUUUAUUUUCCAUUCUCUUUUGCUUCUCCCUCUAUUUUCUUCCCUUCUCCAUCUACGUAAAAGAAAAAAAUUAAAUUGCUCAAAACGUAAAAAAAAAUAUAGGGACUAAUUGUAUAAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017768854.1	ncRNA:24   UUAAUAUGUUAAUCAGGGAUAUAA   1   ||||*|||*||||||||||=|||| targets:1066   AAUUCUACUAUUAGUCCCUGUAUU   1089 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum transcription initiation factor TFIID subunit 7 (LOC108468008), transcript variant X2, mRNA	transcription initiation factor TFIID subunit 7(LOC108468008)	coding protein	psRNATarget
XM_017768853.1	ncRNA:24   UUAAUAUGUUAAUCAGGGAUAUAA   1   ||||*|||*||||||||||=|||| targets:1062   AAUUCUACUAUUAGUCCCUGUAUU   1085 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum transcription initiation factor TFIID subunit 7 (LOC108468008), transcript variant X1, mRNA	transcription initiation factor TFIID subunit 7(LOC108468008)	coding protein	psRNATarget