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BaseInfo

ncRNA ID	novel_gar_miR1325
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr4:54562022-54562171 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180715
Length	23
Mature sequence(if miRNA)	1 - CAAGCUCUUUUCUUUCAUGUUAG - 23
Stem-loop(if miRNA)	--        -  U       GA  UG   -        A     U     -CU   --------CC              C   AACAUGAA GA AAGAGUU  GU  GGU AGCCAAGA UGACU GCCUG   GCU          UUUCAAAGAGGUUU A   |||||||| || |||||||  ||  ||| |||||||| ||||| |||||   |||          ||||||||||||||   UUGUACUU CU UUCUCGA  CA  UCA UCGGUUCU ACUGA CGGAC   CGG          AAAGUUUCUUCAAA A GA        U  U       -A  GU   A        -     -     CAU   UUGUUUUCCA              A
Stem-loop sequence	AACAUGAAGAUAAGAGUUGAGUUGGGUAGCCAAGAAUGACUUGCCUGCUGCUCCUUUCAAAGAGGUUUCAAAAAACUUCUUUGAAAACCUUUUGUUGGCUACCAGGCAGUCAUCUUGGCUAACUUGACAAGCUCUUUUCUUUCAUGUUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017787091.1	ncRNA:23   GAU-----UGUACUUUCUUUUCUCGAAC   1   =||-----||||||||||*||||||||| targets:773   UUAUCACCACAUGAAAGACAAGAGCUUG   800 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum homeobox protein HD1 (LOC108483606), mRNA	homeobox protein HD1(LOC108483606)	coding protein	psRNATarget
XM_017790894.1	ncRNA:23   GAUUGUACUUUCUUUUCUCGAAC   1   =*||||||=|||||||*|||||| targets:898   UGAACAUGGAAGAAAACAGCUUG   920 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum protein CUP-SHAPED COTYLEDON 3 (LOC108486702), mRNA	protein CUP-SHAPED COTYLEDON 3(LOC108486702)	coding protein	psRNATarget
XM_017787039.1	ncRNA:23   GAUUGUACUUUCUUUUCUCGAAC   1   =*||||||=|||||||*|||||| targets:1019   UGAACAUGGAAGAAAACAGCUUG   1041 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum protein CUP-SHAPED COTYLEDON 3-like (LOC108483569), mRNA	protein CUP-SHAPED COTYLEDON 3-like(LOC108483569)	coding protein	psRNATarget
XM_017792857.1	ncRNA:23   GAUUGUACUUUCUUUUCUCGAAC   1   **=|||||=|||||||*|||||| targets:909   GGGACAUGGAAGAAAACAGCUUG   931 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum protein CUP-SHAPED COTYLEDON 3-like (LOC108488568), mRNA	protein CUP-SHAPED COTYLEDON 3-like(LOC108488568)	coding protein	psRNATarget