Search result

BaseInfo

ncRNA ID	novel_gar_miR1320
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr4:23316832-23316915 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180715;SRR3180720
Length	22
Mature sequence(if miRNA)	63 - UCGGACCAGGCUUCAUUCCCCU - 84
Stem-loop(if miRNA)	--       CU A           C      -UU     GGA   GGGAAUG  G CUGGUUCGAGA CAUUCA   CAUAU   C   |||||||  | ||||||||||| ||||||   |||||   C   CCCUUAC  C GACCAGGCUUU GUAAGU   GUGUA   U UC       UU G           A      UUU     AAU
Stem-loop sequence	GGGAAUGCUGACUGGUUCGAGACCAUUCAUUCAUAUGGACCUUAAAUGUGUUUUGAAUGAUUUCGGACCAGGCUUCAUUCCCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017751100.1	ncRNA:22   UCCCCUUACUUCGGACCAGGCU   1   ***||||||||||||||||||= targets:1771   CCUGGAAUGAAGCCUGGUCCGG   1792 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum homeobox-leucine zipper protein ATHB-15 (LOC108453155), mRNA	homeobox-leucine zipper protein ATHB-15(LOC108453155)	coding protein	psRNATarget
XM_017768339.1	ncRNA:22   UCCCCUUACUUCGGACCAGGCU   1   ***||=|||||||||||||||= targets:772   CCUGGGAUGAAGCCUGGUCCGG   793 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum homeobox-leucine zipper protein REVOLUTA (LOC108467628), mRNA	homeobox-leucine zipper protein REVOLUTA(LOC108467628)	coding protein	psRNATarget
XM_017788432.1	ncRNA:22   UCCCCUUACUUCGGACCAGGCU   1   ***||=|||||||||||||||= targets:874   CCUGGGAUGAAGCCUGGUCCGG   895 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum homeobox-leucine zipper protein ATHB-8-like (LOC108484566), mRNA	homeobox-leucine zipper protein ATHB-8-like(LOC108484566)	coding protein	psRNATarget
XM_017794484.1	ncRNA:22   UCCCCUUACUUCGGACCAGGCU   1   |**||=|||||||||||||||= targets:1079   AUUGGGAUGAAGCCUGGUCCGG   1100 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum homeobox-leucine zipper protein ATHB-14-like (LOC108489754), mRNA	homeobox-leucine zipper protein ATHB-14-like(LOC108489754)	coding protein	psRNATarget
XM_017787622.1	ncRNA:22   UCCCCUUACUUCGGACCAGGCU   1   ***||=|||||||||||||||= targets:1014   CCUGGGAUGAAGCCUGGUCCGG   1035 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum homeobox-leucine zipper protein ATHB-8-like (LOC108484018), transcript variant X2, mRNA	homeobox-leucine zipper protein ATHB-8-like(LOC108484018)	coding protein	psRNATarget
XM_017787255.1	ncRNA:22   UCCCCUUACUUCGGACCAGGCU   1   ***||=|||||||||||||||= targets:1255   CCUGGGAUGAAGCCUGGUCCGG   1276 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum homeobox-leucine zipper protein REVOLUTA-like (LOC108483704), transcript variant X3, mRNA	homeobox-leucine zipper protein REVOLUTA-like(LOC108483704)	coding protein	psRNATarget
XM_017787621.1	ncRNA:22   UCCCCUUACUUCGGACCAGGCU   1   ***||=|||||||||||||||= targets:1013   CCUGGGAUGAAGCCUGGUCCGG   1034 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum homeobox-leucine zipper protein ATHB-8-like (LOC108484018), transcript variant X1, mRNA	homeobox-leucine zipper protein ATHB-8-like(LOC108484018)	coding protein	psRNATarget
XM_017787254.1	ncRNA:22   UCCCCUUACUUCGGACCAGGCU   1   ***||=|||||||||||||||= targets:1256   CCUGGGAUGAAGCCUGGUCCGG   1277 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum homeobox-leucine zipper protein REVOLUTA-like (LOC108483704), transcript variant X2, mRNA	homeobox-leucine zipper protein REVOLUTA-like(LOC108483704)	coding protein	psRNATarget
XM_017787253.1	ncRNA:22   UCCCCUUACUUCGGACCAGGCU   1   ***||=|||||||||||||||= targets:1256   CCUGGGAUGAAGCCUGGUCCGG   1277 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum homeobox-leucine zipper protein REVOLUTA-like (LOC108483704), transcript variant X1, mRNA	homeobox-leucine zipper protein REVOLUTA-like(LOC108483704)	coding protein	psRNATarget
XM_017759163.1	ncRNA:22   UCCCCUUACUUCGGACCAGGCU   1   ***||=|||||||||||||||= targets:961   CCUGGGAUGAAGCCUGGUCCGG   982 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum homeobox-leucine zipper protein ATHB-8-like (LOC108459756), mRNA	homeobox-leucine zipper protein ATHB-8-like(LOC108459756)	coding protein	psRNATarget
XM_017747512.1	ncRNA:22   UCCCCUUACUUCGGACCAGGCU   1   ***||=|||||||||||||||= targets:1433   CCUGGGAUGAAGCCUGGUCCGG   1454 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum homeobox-leucine zipper protein REVOLUTA-like (LOC108450068), mRNA	homeobox-leucine zipper protein REVOLUTA-like(LOC108450068)	coding protein	psRNATarget