Search result

BaseInfo

ncRNA ID novel_gar_miR1318
Species Gossypium arboreum
Class miRNA
Genome position Chr4:79959569-79959780 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180715
Length 24
Mature sequence(if miRNA) 1 - UUUGCUCUUUGAUCUAAUGUAUAU - 24
Stem-loop(if miRNA) --   UG     C    AU         -         UUA    U       A   G                -----      UAAU GAAUAAGCAAAUAGUGACAUGU
  GUG  UUAGA CAAA  GUAAAUUGG CGUUUUCUA   AAAA UUCAUCC UUU UAUUAUUAAAAAUUGG     CGUGGC    C                      G
  |||  ||||| ||||  ||||||||| |||||||||   |||| ||||||| ||| ||||||||||||||||     ||||||    |                      U
  UAU  AAUCU GUUU  CGUUUAAUU GUAAGAGAU   UUUU AAGUAGG AAA AUGAUAAUUUUUGAUC     AUAUGU    A                      C
UA   GU     A    CU         A         ---    U       A   G                AGGGA      ---- AUCGUACUAUAUGUGCAUCGUG
Stem-loop sequence GUGUGUUAGACCAAAAUGUAAAUUGGCGUUUUCUAUUAAAAAUUUCAUCCAUUUGUAUUAUUAAAAAUUGGCGUGGCUAAUCGAAUAAGCAAAUAGUGACAUGUGUCGUGCUACGUGUAUAUCAUGCUAAUGUAUAAGGGACUAGUUUUUAAUAGUAGAAAAGGAUGAAUUUUUUAGAGAAUGAUUAAUUUGCUCUUUGAUCUAAUGUAUAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017759173.1
ncRNA:24   UAUAUGUAAUCUAGUUUCUCGUUU   1
  *|=||||||||||||||||||||=
targets:2482   CUGUACAUUAGAUCAAAGAGCAAG   2505

1.0 PREDICTED: Gossypium arboreum uncharacterized LOC108459768 (LOC108459768), mRNA uncharacterized LOC108459768(LOC108459768) coding protein psRNATarget
XM_017766788.1
ncRNA:24   UAUAUGUAAUCUAGUUUCUCGUUU   1
  *|||||||||||||||||||||=|
targets:1099   UUAUACAUUAGAUCAAAGAGCAGA   1122

1.5 PREDICTED: Gossypium arboreum uncharacterized LOC108466432 (LOC108466432), mRNA uncharacterized LOC108466432(LOC108466432) coding protein psRNATarget
XM_017777449.1
ncRNA:24   UA--UAUGUAAUCUAGUUUCUCGUUU   1
  ||--=|||=|||*|||||||||||||
targets:1622   AUCAGUACGUUAAAUCAAAGAGCAAA   1647

2.0 PREDICTED: Gossypium arboreum cytochrome P450 71D10-like (LOC108475481), mRNA cytochrome P450 71D10-like(LOC108475481) coding protein psRNATarget
XM_017757759.1
ncRNA:24   UAUAUGUAAUCUAGUUUCUCGUUU   1
  *|||*=||||*|||||||||||||
targets:1441   CUAUCUAUUAUAUCAAAGAGCAAA   1464

2.0 PREDICTED: Gossypium arboreum uncharacterized LOC108458388 (LOC108458388), transcript variant X2, mRNA uncharacterized LOC108458388(LOC108458388) coding protein psRNATarget
XM_017757758.1
ncRNA:24   UAUAUGUAAUCUAGUUUCUCGUUU   1
  *|||*=||||*|||||||||||||
targets:1501   CUAUCUAUUAUAUCAAAGAGCAAA   1524

2.0 PREDICTED: Gossypium arboreum uncharacterized LOC108458388 (LOC108458388), transcript variant X1, mRNA uncharacterized LOC108458388(LOC108458388) coding protein psRNATarget
XM_017752094.1
ncRNA:24   UAUAUGUAAUCUAGUUUCUCGUUU   1
  *|||||=|||||||||||||=|||
targets:1109   CUAUACGUUAGAUCAAAGAGUAAA   1132

2.5 PREDICTED: Gossypium arboreum universal stress protein PHOS32-like (LOC108453792), transcript variant X3, mRNA universal stress protein PHOS32-like(LOC108453792) coding protein psRNATarget
XM_017757940.1
ncRNA:24   UAUAUGUAAUCUAGUUUCUCGUUU   1
  *|=|||=||||||*||||||||||
targets:1044   UUGUACGUUAGAUAAAAGAGCAAA   1067

2.5 PREDICTED: Gossypium arboreum uncharacterized LOC108458516 (LOC108458516), mRNA uncharacterized LOC108458516(LOC108458516) coding protein psRNATarget
XM_017784090.1
ncRNA:24   UAUAUGUAAUCUAGUUUCUCGUUU   1
  *|=|||=||||||||||*||||||
targets:1321   UUGUACGUUAGAUCAAAAAGCAAA   1344

2.5 PREDICTED: Gossypium arboreum uncharacterized LOC108480941 (LOC108480941), transcript variant X1, mRNA uncharacterized LOC108480941(LOC108480941) coding protein psRNATarget
XM_017760336.1
ncRNA:24   UAUAUGUAAUCUAGUUUCUCGUUU   1
  *|=|||=||||||||||*||||||
targets:2143   CUGUACGUUAGAUCAAAAAGCAAA   2166

2.5 PREDICTED: Gossypium arboreum protein NRT1/ PTR FAMILY 8.3-like (LOC108460726), transcript variant X1, mRNA protein NRT1/ PTR FAMILY 8.3-like(LOC108460726) coding protein psRNATarget
XM_017760338.1
ncRNA:24   UAUAUGUAAUCUAGUUUCUCGUUU   1
  *|=|||=||||||||||*||||||
targets:2239   CUGUACGUUAGAUCAAAAAGCAAA   2262

2.5 PREDICTED: Gossypium arboreum protein NRT1/ PTR FAMILY 8.3-like (LOC108460726), transcript variant X2, mRNA protein NRT1/ PTR FAMILY 8.3-like(LOC108460726) coding protein psRNATarget
XM_017776106.1
ncRNA:24   UAUAUGUAAUCUAGUUUCUCGUUU   1
  *||-||=||||||=||||||||||
targets:649   CUA-ACGUUAGAUUAAAGAGCAAA   671

2.5 PREDICTED: Gossypium arboreum serine/threonine-protein kinase D6PKL1 (LOC108474182), transcript variant X2, mRNA serine/threonine-protein kinase D6PKL1(LOC108474182) coding protein psRNATarget
XM_017760419.1
ncRNA:24   UAUAUGUAAUCUAGUUUCUCGUUU   1
  **|*||=|||||||||||||=|||
targets:3456   CAAAACGUUAGAUCAAAGAGUAAA   3479

2.5 PREDICTED: Gossypium arboreum pentatricopeptide repeat-containing protein At2g17140 (LOC108460778), transcript variant X1, mRNA pentatricopeptide repeat-containing protein At2g17140(LOC108460778) coding protein psRNATarget
XM_017760420.1
ncRNA:24   UAUAUGUAAUCUAGUUUCUCGUUU   1
  **|*||=|||||||||||||=|||
targets:3457   CAAAACGUUAGAUCAAAGAGUAAA   3480

2.5 PREDICTED: Gossypium arboreum pentatricopeptide repeat-containing protein At2g17140 (LOC108460778), transcript variant X2, mRNA pentatricopeptide repeat-containing protein At2g17140(LOC108460778) coding protein psRNATarget
XM_017760422.1
ncRNA:24   UAUAUGUAAUCUAGUUUCUCGUUU   1
  **|*||=|||||||||||||=|||
targets:3461   CAAAACGUUAGAUCAAAGAGUAAA   3484

2.5 PREDICTED: Gossypium arboreum pentatricopeptide repeat-containing protein At2g17140 (LOC108460778), transcript variant X3, mRNA pentatricopeptide repeat-containing protein At2g17140(LOC108460778) coding protein psRNATarget
XM_017753157.1
ncRNA:24   UAUAUGUAAUCUAGUUUCUCGUUU   1
  *|=|||||||*|||||*|||||||
targets:803   CUGUACAUUAUAUCAAUGAGCAAA   826

2.5 PREDICTED: Gossypium arboreum peptide methionine sulfoxide reductase B5-like (LOC108454631), mRNA peptide methionine sulfoxide reductase B5-like(LOC108454631) coding protein psRNATarget
XM_017792380.1
ncRNA:24   UAUAUGUAAUCUAGUUUCUCGUUU   1
  *|*|||||*|||||||||||=|||
targets:1609   UUCUACAUGAGAUCAAAGAGUAAA   1632

2.5 PREDICTED: Gossypium arboreum probable LRR receptor-like serine/threonine-protein kinase At2g23950 (LOC108488066), mRNA probable LRR receptor-like serine/threonine-protein kinase At2g23950(LOC108488066) coding protein psRNATarget
XM_017754697.1
ncRNA:24   UAUAUGUAAUCUAGUUUCUCGUUU   1
  *||||*=|||*|||||||||||||
targets:1365   UUAUAAGUUAUAUCAAAGAGCAAA   1388

3.0 PREDICTED: Gossypium arboreum uncharacterized protein DDB_G0271670 (LOC108456101), transcript variant X2, mRNA uncharacterized protein DDB_G0271670(LOC108456101) coding protein psRNATarget
XM_017754696.1
ncRNA:24   UAUAUGUAAUCUAGUUUCUCGUUU   1
  *||||*=|||*|||||||||||||
targets:1365   UUAUAAGUUAUAUCAAAGAGCAAA   1388

3.0 PREDICTED: Gossypium arboreum uncharacterized protein DDB_G0271670 (LOC108456101), transcript variant X1, mRNA uncharacterized protein DDB_G0271670(LOC108456101) coding protein psRNATarget
XM_017780779.1
ncRNA:24   UAUA-UGUAAU-CUAGUUUCUCGUUU   1
  ||=|-=||*||-||||||||||||||
targets:242   AUGUUGCAGUAAGAUCAAAGAGCAAA   267

3.0 PREDICTED: Gossypium arboreum non-specific lipid-transfer protein 2-like (LOC108478327), mRNA non-specific lipid-transfer protein 2-like(LOC108478327) coding protein psRNATarget
XM_017784452.1
ncRNA:20   UGUAAUCUAGUUUCUCGUUU   1
  |==||||||||||||||||*
targets:1   AUGUUAGAUCAAAGAGCAAU   20

3.0 PREDICTED: Gossypium arboreum myb-related protein 305-like (LOC108481300), mRNA myb-related protein 305-like(LOC108481300) coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.