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BaseInfo

ncRNA ID novel_gar_miR1316
Species Gossypium arboreum
Class miRNA
Genome position Chr4:124684811-124684881 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180715
Length 21
Mature sequence(if miRNA) 1 - UGACGUGGACAAAAUGCUCCC - 21
Stem-loop(if miRNA) --                C       --     -  C
  GAGCGUUUUGUCUACG CAGCAAA  GCGUG CC C
  |||||||||||||||| |||||||  ||||| ||
  CUCGUAAAACAGGUGC GUCGUUU  UGCGC GG A
CC                A       UU     A  A
Stem-loop sequence GAGCGUUUUGUCUACGCCAGCAAAGCGUGCCCCAAGGACGCGUUUUUUGCUGACGUGGACAAAAUGCUCCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017784438.1
ncRNA:21   CCCUCGUAAAACAGGUGCAGU   1
  ||||||=|||||||||=||||
targets:5   GGGAGCGUUUUGUCCAUGUCA   25

2.5 PREDICTED: Gossypium arboreum serine/threonine-protein phosphatase 7 long form homolog (LOC108481281), mRNA serine/threonine-protein phosphatase 7 long form homolog(LOC108481281) coding protein psRNATarget