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BaseInfo

ncRNA ID novel_gar_miR1307
Species Gossypium arboreum
Class miRNA
Genome position Chr3:42648027-42648104 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180715;SRR3180720
Length 23
Mature sequence(if miRNA) 1 - AAUCUCCCUCAAACGCUUCCAGC - 23
Stem-loop(if miRNA) --AA     CU     G         -AUA    ACACAC
    UCUCC  CAAAC CUUCCAGCA    UGCU      U
    |||||  ||||| |||||||||    ||||
    AGAGG  GUUUG GAAGGUCGU    ACGA      A
AGUA     AG     -         CAUG    CCCCUC
Stem-loop sequence AAUCUCCCUCAAACGCUUCCAGCAAUAUGCUACACACUACUCCCCAGCAGUACUGCUGGAAGGUUUGGAGGAGAAUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017765734.1
ncRNA:23   CGACCUUCGCAAACUCCCUCUAA   1
  ***|||||=*||||||||||||*
targets:65   CGAGGAAGUCUUUGAGGGAGAUG   87

3.0 PREDICTED: Gossypium arboreum uncharacterized LOC108465407 (LOC108465407), partial mRNA uncharacterized LOC108465407(LOC108465407) coding protein psRNATarget