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BaseInfo

ncRNA ID	novel_gar_miR1306
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr3:39864491-39864681 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180715;SRR3180720
Length	24
Mature sequence(if miRNA)	168 - AUUUGCUCUUUGAUCUAUCAUAUA - 191
Stem-loop(if miRNA)	--    U  A   C  U       UA        U    AC    G                     A     CUUU  AA   -      U   U CUU   UAUG UA AUC AA AGUAAAU  GUCUUUUU GUUA  AAUU CAUUUAUUUUUAUUGUUAAAA UUAGU    GU  AUC GACAAA UAG C   A   |||| || ||| || |||||||  |||||||| ||||  |||| ||||||||||||||||||||| |||||    ||  ||| |||||| ||| |   AUAC AU UAG UU UCGUUUA  UAGGAGGA UAAU  UUAA GUAAGUAAGAAUAACAAUUUU GAUCA    CG  UAG UUGUUU AUU G   C AU    U  C   U  C       UG        -    AU    A                     C     ----  --   A      U   - UUC
Stem-loop sequence	UAUGUUAAAUCCAAUAGUAAAUUAGUCUUUUUUGUUAACAAUUGCAUUUAUUUUUAUUGUUAAAAAUUAGUCUUUGUAAAUCGACAAAUUAGUCCUUACCUUGUUAUUUUGUUAGAUGCACUAGCUUUUAACAAUAAGAAUGAAUGAAAUUUAUAAUAGGAGGAUGUAUUUGCUCUUUGAUCUAUCAUAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017754697.1	ncRNA:24   AUAUACUAUCUAGUUUCUCGUUUA   1   ||||*|*||*|||||||||||||| targets:1366   UAUAAGUUAUAUCAAAGAGCAAAU   1389 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum uncharacterized protein DDB_G0271670 (LOC108456101), transcript variant X2, mRNA	uncharacterized protein DDB_G0271670(LOC108456101)	coding protein	psRNATarget
XM_017754696.1	ncRNA:24   AUAUACUAUCUAGUUUCUCGUUUA   1   ||||*|*||*|||||||||||||| targets:1366   UAUAAGUUAUAUCAAAGAGCAAAU   1389 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum uncharacterized protein DDB_G0271670 (LOC108456101), transcript variant X1, mRNA	uncharacterized protein DDB_G0271670(LOC108456101)	coding protein	psRNATarget
XM_017777449.1	ncRNA:24   AUAUACUAUCUAGUUUCUCGUUUA   1   *=||*|*||*|||||||||||||| targets:1625   AGUACGUUAAAUCAAAGAGCAAAU   1648 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum cytochrome P450 71D10-like (LOC108475481), mRNA	cytochrome P450 71D10-like(LOC108475481)	coding protein	psRNATarget
XM_017785103.1	ncRNA:24   AUAUACUAUCUAGUUUCUCGUUUA   1   ||||||*||||||||*|||||||| targets:916   UAUAUGUUAGAUCAAUGAGCAAAU   939 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum actin-related protein 2/3 complex subunit 5A-like (LOC108481997), mRNA	actin-related protein 2/3 complex subunit 5A-like(LOC108481997)	coding protein	psRNATarget
XM_017752094.1	ncRNA:24   AUAUACUAUCUAGUUUCUCGUUUA   1   ||||*|*||||||||||||=|||| targets:1110   UAUACGUUAGAUCAAAGAGUAAAU   1133 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum universal stress protein PHOS32-like (LOC108453792), transcript variant X3, mRNA	universal stress protein PHOS32-like(LOC108453792)	coding protein	psRNATarget
XM_017760336.1	ncRNA:24   AUAUACUAUCUAGUUUCUCGUUUA   1   |=||*|*|||||||||*||||||| targets:2144   UGUACGUUAGAUCAAAAAGCAAAU   2167 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum protein NRT1/ PTR FAMILY 8.3-like (LOC108460726), transcript variant X1, mRNA	protein NRT1/ PTR FAMILY 8.3-like(LOC108460726)	coding protein	psRNATarget
XM_017760338.1	ncRNA:24   AUAUACUAUCUAGUUUCUCGUUUA   1   |=||*|*|||||||||*||||||| targets:2240   UGUACGUUAGAUCAAAAAGCAAAU   2263 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum protein NRT1/ PTR FAMILY 8.3-like (LOC108460726), transcript variant X2, mRNA	protein NRT1/ PTR FAMILY 8.3-like(LOC108460726)	coding protein	psRNATarget
XM_017784452.1	ncRNA:21   UACUAUCUAGUUUCUCGUUUA   1   |||*|||||||||||||||*| targets:1   AUGUUAGAUCAAAGAGCAAUU   21 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum myb-related protein 305-like (LOC108481300), mRNA	myb-related protein 305-like(LOC108481300)	coding protein	psRNATarget
XM_017789739.1	ncRNA:24   AUAUACUAUCUAGUUUCUCGUUUA   1   |=*|||||*|*||||||||||||* targets:387   UGCAUGAUUGCUCAAAGAGCAAAA   410 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum cysteine-rich repeat secretory protein 55-like (LOC108485893), mRNA	cysteine-rich repeat secretory protein 55-like(LOC108485893)	coding protein	psRNATarget