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BaseInfo

ncRNA ID novel_gar_miR1304
Species Gossypium arboreum
Class miRNA
Genome position Chr3:27591765-27591877 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180715;SRR3180720
Length 24
Mature sequence(if miRNA) 90 - AACUCGAUUAACUUGAAUAACUCG - 113
Stem-loop(if miRNA) --AA        A   U             AUUC AAAACACAACUCGAUUCGAAUU
    UUAUUCAA UUA UCGAGUUAUUCGA    G                      C
    |||||||| ||| |||||||||||||    |                      G
    AAUAAGUU AAU AGCUCAAUAAGCU    G                      A
GCUC        C   U             --CA UUGAGCUUAAAAAAAAGCUUAA
Stem-loop sequence AAUUAUUCAAAUUAUUCGAGUUAUUCGAAUUCGAAAACACAACUCGAUUCGAAUUCGAAAUUCGAAAAAAAAUUCGAGUUGACUCGAAUAACUCGAUUAACUUGAAUAACUCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017783798.1
ncRNA:24   GCUCAAUA-AGUUCAAUUAGCUCAA   1
  *|=|*|||-||||||||||||||||
targets:489   GGGGCUAUCUCAAGUUAAUCGAGUU   513

2.0 PREDICTED: Gossypium arboreum squalene monooxygenase-like (LOC108480717), mRNA squalene monooxygenase-like(LOC108480717) coding protein psRNATarget