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BaseInfo

ncRNA ID novel_gar_miR1298
Species Gossypium arboreum
Class miRNA
Genome position Chr3:68315576-68315652 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180715
Length 21
Mature sequence(if miRNA) 1 - UCAUGAUCUUUAGUGGCGUUU - 21
Stem-loop(if miRNA) --GU                           C    - U
    GCCGCUAAAGGUCAUGACUUUUAGCGG GUUU C A
    ||||||||||||||||||||||||||| |||| |
    CGGUGAUUUCUAGUACUGGAAAUCGCC CGAA G G
UUUG                           A    A U
Stem-loop sequence GUGCCGCUAAAGGUCAUGACUUUUAGCGGCGUUUCUAGUGAAAGCACCGCUAAAGGUCAUGAUCUUUAGUGGCGUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017768165.1
ncRNA:21   UUUGCGGUGAUUUCUAGUACU   1
  ||=||||=||||||||||||*
targets:1500   AAGCGCCGCUAAAGAUCAUGU   1520

3.0 PREDICTED: Gossypium arboreum diphthamide biosynthesis protein 2-like (LOC108467522), mRNA diphthamide biosynthesis protein 2-like(LOC108467522) coding protein psRNATarget