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BaseInfo

ncRNA ID	novel_gar_miR1286
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr2:68490071-68490280 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180715
Length	24
Mature sequence(if miRNA)	1 - AUUUGCUCUUUGAUCUAACGUAUA - 24
Stem-loop(if miRNA)	--  UA            AA   CUAA  A         AAA       C                      - G --G   GA      AACCAAAC  U         C   UA  UUAGAUCAAAGA  AAA    UC UUUCUUUUA   AUUUCAU UGUUUCUACUGUUAAAAACUGG C U   ACU  UAGAAU        AG UACAUGUGG A   ||  ||||||||||||  |||    || |||||||||   ||||||| |||||||||||||||||||||| | |   |||  ||||||        || |||||||||   AU  AAUCUAGUUUCU  UUU    AG GAAGAAAAU   UAAGGUA AUAAAGAUGAUAAUUUUUGACC G A   UGA  GUCUUA        UC AUGUACACC U AU  GC            CG   AACC  -         GUA       C                      A G AUA   -A      -------C  C         G
Stem-loop sequence	UAUAUUAGAUCAAAGAAAAAACUAAUCAUUUCUUUUAAAAAUUUCAUCUGUUUCUACUGUUAAAAACUGGCGUGACUGAUAGAAUAACCAAACAGUUACAUGUGGCAUGCCACAUGUACCUCAUUCUGAAGUAUAAGGACCAGUUUUUAAUAGUAGAAAUACAUGGAAUAUGUAAAAGAAGGACCAAUUUGCUCUUUGAUCUAACGUAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017777449.1	ncRNA:24   AUAUGCAAUCUAGUUUCUCGUUUA   1   *=|||||||*|||||||||||||| targets:1625   AGUACGUUAAAUCAAAGAGCAAAU   1648 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum cytochrome P450 71D10-like (LOC108475481), mRNA	cytochrome P450 71D10-like(LOC108475481)	coding protein	psRNATarget
XM_017754696.1	ncRNA:24   AUAUGCAAUCUAGUUUCUCGUUUA   1   ||||*||||*|||||||||||||| targets:1366   UAUAAGUUAUAUCAAAGAGCAAAU   1389 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum uncharacterized protein DDB_G0271670 (LOC108456101), transcript variant X1, mRNA	uncharacterized protein DDB_G0271670(LOC108456101)	coding protein	psRNATarget
XM_017754697.1	ncRNA:24   AUAUGCAAUCUAGUUUCUCGUUUA   1   ||||*||||*|||||||||||||| targets:1366   UAUAAGUUAUAUCAAAGAGCAAAU   1389 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum uncharacterized protein DDB_G0271670 (LOC108456101), transcript variant X2, mRNA	uncharacterized protein DDB_G0271670(LOC108456101)	coding protein	psRNATarget
XM_017752094.1	ncRNA:24   AUAUGCAAUCUAGUUUCUCGUUUA   1   |||||||||||||||||||=|||| targets:1110   UAUACGUUAGAUCAAAGAGUAAAU   1133 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum universal stress protein PHOS32-like (LOC108453792), transcript variant X3, mRNA	universal stress protein PHOS32-like(LOC108453792)	coding protein	psRNATarget
XM_017785103.1	ncRNA:24   AUAUGCAAUCUAGUUUCUCGUUUA   1   ||||=||||||||||*|||||||| targets:916   UAUAUGUUAGAUCAAUGAGCAAAU   939 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum actin-related protein 2/3 complex subunit 5A-like (LOC108481997), mRNA	actin-related protein 2/3 complex subunit 5A-like(LOC108481997)	coding protein	psRNATarget
XM_017760336.1	ncRNA:24   AUAUGCAAUCUAGUUUCUCGUUUA   1   |=||||||||||||||*||||||| targets:2144   UGUACGUUAGAUCAAAAAGCAAAU   2167 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum protein NRT1/ PTR FAMILY 8.3-like (LOC108460726), transcript variant X1, mRNA	protein NRT1/ PTR FAMILY 8.3-like(LOC108460726)	coding protein	psRNATarget
XM_017760338.1	ncRNA:24   AUAUGCAAUCUAGUUUCUCGUUUA   1   |=||||||||||||||*||||||| targets:2240   UGUACGUUAGAUCAAAAAGCAAAU   2263 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum protein NRT1/ PTR FAMILY 8.3-like (LOC108460726), transcript variant X2, mRNA	protein NRT1/ PTR FAMILY 8.3-like(LOC108460726)	coding protein	psRNATarget
XM_017784452.1	ncRNA:21   UGCAAUCUAGUUUCUCGUUUA   1   |=|||||||||||||||||*| targets:1   AUGUUAGAUCAAAGAGCAAUU   21 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum myb-related protein 305-like (LOC108481300), mRNA	myb-related protein 305-like(LOC108481300)	coding protein	psRNATarget
XM_017757759.1	ncRNA:24   AUAUGCAAUCUAGUUUCUCGUUUA   1   |||*=*|||*|||||||||||||| targets:1442   UAUCUAUUAUAUCAAAGAGCAAAU   1465 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum uncharacterized LOC108458388 (LOC108458388), transcript variant X2, mRNA	uncharacterized LOC108458388(LOC108458388)	coding protein	psRNATarget
XM_017757758.1	ncRNA:24   AUAUGCAAUCUAGUUUCUCGUUUA   1   |||*=*|||*|||||||||||||| targets:1502   UAUCUAUUAUAUCAAAGAGCAAAU   1525 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum uncharacterized LOC108458388 (LOC108458388), transcript variant X1, mRNA	uncharacterized LOC108458388(LOC108458388)	coding protein	psRNATarget
XM_017766788.1	ncRNA:24   AUAUGCAAUCUAGUUUCUCGUUUA   1   |||||*|||||||||||||||=|| targets:1100   UAUACAUUAGAUCAAAGAGCAGAU   1123 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108466432 (LOC108466432), mRNA	uncharacterized LOC108466432(LOC108466432)	coding protein	psRNATarget
XM_017749617.1	ncRNA:24   AUAUGCAAUCUAGUUUCUCGUUUA   1   |=|||||||*|||||||||||=|| targets:815   UGUACGUUAAAUCAAAGAGCAGAU   838 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum DNA polymerase zeta processivity subunit (LOC108451912), transcript variant X2, mRNA	DNA polymerase zeta processivity subunit(LOC108451912)	coding protein	psRNATarget
XM_017749616.1	ncRNA:24   AUAUGCAAUCUAGUUUCUCGUUUA   1   |=|||||||*|||||||||||=|| targets:851   UGUACGUUAAAUCAAAGAGCAGAU   874 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum DNA polymerase zeta processivity subunit (LOC108451912), transcript variant X1, mRNA	DNA polymerase zeta processivity subunit(LOC108451912)	coding protein	psRNATarget
XM_017757940.1	ncRNA:24   AUAUGCAAUCUAGUUUCUCGUUUA   1   |=||||||||||*||||||||||* targets:1045   UGUACGUUAGAUAAAAGAGCAAAC   1068 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108458516 (LOC108458516), mRNA	uncharacterized LOC108458516(LOC108458516)	coding protein	psRNATarget
XM_017784090.1	ncRNA:24   AUAUGCAAUCUAGUUUCUCGUUUA   1   |=||||||||||||||*||||||* targets:1322   UGUACGUUAGAUCAAAAAGCAAAC   1345 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108480941 (LOC108480941), transcript variant X1, mRNA	uncharacterized LOC108480941(LOC108480941)	coding protein	psRNATarget
XM_017776106.1	ncRNA:24   AUAUGCAAUCUAGUUUCUCGUUUA   1   ||-|||||||||=||||||||||* targets:650   UA-ACGUUAGAUUAAAGAGCAAAC   672 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum serine/threonine-protein kinase D6PKL1 (LOC108474182), transcript variant X2, mRNA	serine/threonine-protein kinase D6PKL1(LOC108474182)	coding protein	psRNATarget
XM_017755316.1	ncRNA:24   AUAUGCAAUCUAGUUUCUCGUUUA   1   |=||-||||||||||||||=|||* targets:1196   UGUA-GUUAGAUCAAAGAGUAAAC   1218 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum lon protease-like (LOC108456709), mRNA	lon protease-like(LOC108456709)	coding protein	psRNATarget