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BaseInfo

ncRNA ID	novel_gar_miR1277
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr1:48661070-48661200 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180715
Length	23
Mature sequence(if miRNA)	109 - AAGUGAUAUGUCACUAGGAUGGU - 131
Stem-loop(if miRNA)	--       A     ----     GUUA - A      UCUAUAUUCUGAAGAAGGCGAUCGAAAUGUGUA   UAUUUUA GUGAU    UUAAU    G U UCGAUU                                 A   ||||||| |||||    |||||    | | ||||||   GUAGGAU CACUG    GUGAA    C U GGGAUU                                 U UG       -     UAUA     ---- A -      AGAUAAGGGUUCCAAGUUUGCCCUAAGAAAAGU
Stem-loop sequence	UAUUUUAAGUGAUUUAAUGUUAGUAUCGAUUUCUAUAUUCUGAAGAAGGCGAUCGAAAUGUGUAAUUGAAAAGAAUCCCGUUUGAACCUUGGGAAUAGAUUAGGGUACAAGUGAUAUGUCACUAGGAUGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017757004.1	ncRNA:23   UGGUAGGAUCACUGUAUAGUGAA   1   =|=*|==*||||||||||||||| targets:301   GCUUUUUCAGUGACAUAUCACUU   323 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum DExH-box ATP-dependent RNA helicase DExH17 (LOC108457835), transcript variant X5, mRNA	DExH-box ATP-dependent RNA helicase DExH17(LOC108457835)	coding protein	psRNATarget
XM_017757003.1	ncRNA:23   UGGUAGGAUCACUGUAUAGUGAA   1   =|=*|==*||||||||||||||| targets:535   GCUUUUUCAGUGACAUAUCACUU   557 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum DExH-box ATP-dependent RNA helicase DExH17 (LOC108457835), transcript variant X4, mRNA	DExH-box ATP-dependent RNA helicase DExH17(LOC108457835)	coding protein	psRNATarget
XM_017757001.1	ncRNA:23   UGGUAGGAUCACUGUAUAGUGAA   1   =|=*|==*||||||||||||||| targets:535   GCUUUUUCAGUGACAUAUCACUU   557 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum DExH-box ATP-dependent RNA helicase DExH17 (LOC108457835), transcript variant X2, mRNA	DExH-box ATP-dependent RNA helicase DExH17(LOC108457835)	coding protein	psRNATarget
XM_017757002.1	ncRNA:23   UGGUAGGAUCACUGUAUAGUGAA   1   =|=*|==*||||||||||||||| targets:535   GCUUUUUCAGUGACAUAUCACUU   557 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum DExH-box ATP-dependent RNA helicase DExH17 (LOC108457835), transcript variant X3, mRNA	DExH-box ATP-dependent RNA helicase DExH17(LOC108457835)	coding protein	psRNATarget
XM_017757000.1	ncRNA:23   UGGUAGGAUCACUGUAUAGUGAA   1   =|=*|==*||||||||||||||| targets:535   GCUUUUUCAGUGACAUAUCACUU   557 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum DExH-box ATP-dependent RNA helicase DExH17 (LOC108457835), transcript variant X1, mRNA	DExH-box ATP-dependent RNA helicase DExH17(LOC108457835)	coding protein	psRNATarget