ncRNA ID | novel_gar_miR1272 |
Species | Gossypium arboreum |
Class | miRNA |
Genome position | Chr1:9677198-9677417 [-] |
Reference genome | Gossypium_arboreum_v1.0 |
Source | SRR3180715 |
Length | 23 |
Mature sequence(if miRNA) | 198 - AUUUUGUGCUGGCCUGUCAAUGG - 220 |
Stem-loop(if miRNA) |
--      -  C              A        --U   --UAAAAA      UUU      UUUUU            C        A          A        UAAAA   AUUUUG UG UGGCCUGUCAAUGG CGGCACCA   UAU        UAAAAA   AAAUUU     GUGCUGGCUUGU AAUGGCCG CACCAAAAUA GAGUUUUU     A   |||||| || |||||||||||||| ||||||||   |||        ||||||   ||||||     |||||||||||| |||||||| |||||||||| ||||||||   UAAAAC AC ACCGGACAGUUACC GUCGUGGU   AUG        AUUUUU   UUUAAA     CACGACCGGACA UUACCGGC GUGGUUUUAU CUCAAAAA     A UU      C  A              G        UUU   CUCAAAAA      -UU      ----C            A        C          G        UUAAA |
Stem-loop sequence | AUUUUGUGCUGGCCUGUCAAUGGACGGCACCAUUAUUAAAAAUAAAAAUUUAAAUUUUUUUUGUGCUGGCUUGUCAAUGGCCGACACCAAAAUAAGAGUUUUUUAAAAAAAAAUUAAAAACUCGUAUUUUGGUGCCGGCCAUUAACAGGCCAGCACCAAAUUUUUUUUUUAAAAAACUCGUAUUUUGGUGCUGGCCAUUGACAGGCCAACACCAAAAUUU |