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BaseInfo

ncRNA ID	novel_gar_miR1262
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr1:36884566-36884676 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180715
Length	24
Mature sequence(if miRNA)	1 - UACAAAUAGAUUGUCAUACGAGCU - 24
Stem-loop(if miRNA)	--A   A          C  G         --------------          A  C   UU    UUG UGUGGCAGUC AU UGUAUUUUA              UAUUGAUAUG UA UAU  A    ||| |||||||||| || |||||||||              |||||||||| || |||  U    AGC AUACUGUUAG UA ACAUGAAGU              AUGAUUGUAC GU AUA  U UCG   -          A  A         ACAAAAAAUAAUAA          C  -   UU
Stem-loop sequence	AUUGAUGUGGCAGUCCAUGUGUAUUUUAUAUUGAUAUGAUACUAUUUAUUUUAUAUGCCAUGUUAGUAAAUAAUAAAAAACAUGAAGUACAAAUAGAUUGUCAUACGAGCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017793008.1	ncRNA:24   UC--GAGCAUACUGUUAGAUAAACAU   1   ||--=|=||||**||||||||||||| targets:1927   AGACUUUGUAUUUCAAUCUAUUUGUA   1952 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum transient receptor potential cation channel subfamily A member 1-like (LOC108488718), transcript variant X2, mRNA	transient receptor potential cation channel subfamily A member 1-like(LOC108488718)	coding protein	psRNATarget
XM_017793007.1	ncRNA:24   UC--GAGCAUACUGUUAGAUAAACAU   1   ||--=|=||||**||||||||||||| targets:2020   AGACUUUGUAUUUCAAUCUAUUUGUA   2045 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum transient receptor potential cation channel subfamily A member 1-like (LOC108488718), transcript variant X1, mRNA	transient receptor potential cation channel subfamily A member 1-like(LOC108488718)	coding protein	psRNATarget
XM_017747447.1	ncRNA:24   UCGAGCAUACUGUUAGAUAAACAU   1   *||-||*=*||||||||||||||| targets:1363   UGC-CGAGAGACAAUCUAUUUGUA   1385 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum transcription factor-like protein DPB (LOC108450023), transcript variant X1, mRNA	transcription factor-like protein DPB(LOC108450023)	coding protein	psRNATarget