| ncRNA ID | novel_gar_miR1260 |
| Species | Gossypium arboreum |
| Class | miRNA |
| Genome position | Chr1:43532440-43532666 [-] |
| Reference genome | Gossypium_arboreum_v1.0 |
| Source | SRR3180715 |
| Length | 24 |
| Mature sequence(if miRNA) | 204 - GAGAAAGGAUUGUAUGAAACUGUG - 227 |
| Stem-loop(if miRNA) |
--G U A C AA C C --- A C A -A UUUG AGAAAGGAU GUAUGAAACUGUGAUUUCAC UCAUCCUUAUCC UUUCCAAU AAGAAUGA AAAU AGAUUUUU UCUCUU A UUUUAGC UUUUU GUUGGA A ||||||||| |||||||||||||||||||| |||||||||||| |||||||| |||||||| |||| |||||||| |||||| | ||||||| ||||| |||||| UCUUUCCUA CAUACUUUGAUACUAAGGUG AGUAGGAAUAGG AAAGGUUA UUCUUACU UUUA UCUAAAAA AGAGAA U AAAAUCG AAAAA CGACUU U UGA - C A CC U U AAA C A A GA UUUU |
| Stem-loop sequence | GAGAAAGGAUUGUAUGAAACUGUGAUUUCACAUCAUCCUUAUCCCUUUCCAAUAAAAGAAUGACAAAUCAGAUUUUUUCUCUUAACUUUUAGCAUUUUUAGUUGGAUUUGAUUUUUUUCAGCAGAAAAAAGCUAAAAAUCAAGAGAAAAAAAAAUCUUAUUUUUCAUUCUUCCAUUGGAAAAGGAUAAGGAUGACGUGGAAUCAUAGUUUCAUACAUCCUUUCUAGU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_017758885.1 |
|
1.5 | PREDICTED: Gossypium arboreum enolase-like (LOC108459500), mRNA | enolase-like(LOC108459500) | coding protein | psRNATarget | |||||||||
| XM_017759869.1 |
|
1.5 | PREDICTED: Gossypium arboreum 3-phosphoinositide-dependent protein kinase 2-like (LOC108460387), transcript variant X2, mRNA | 3-phosphoinositide-dependent protein kinase 2-like(LOC108460387) | coding protein | psRNATarget | |||||||||
| XM_017758885.1 |
|
2.5 | PREDICTED: Gossypium arboreum enolase-like (LOC108459500), mRNA | enolase-like(LOC108459500) | coding protein | psRNATarget |