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BaseInfo

ncRNA ID novel_gar_miR1256
Species Gossypium arboreum
Class miRNA
Genome position Chr13:44292488-44292601 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180715;SRR3180720
Length 24
Mature sequence(if miRNA) 1 - GAGUACUUGAACUUUCAAAAUGCA - 24
Stem-loop(if miRNA) -- A                                      --  UUUCAAAAAAAG
  G GUACUUGAACUUUCAAAAUGCAUCAAAAAGACCCUCAA  GC            C
  | ||||||||||||||||||||||||||||||||||||||  ||
  C CAUGAACUUGAAAGUUUUACGUAGUUUUUCUGGGAGUU  UC            A
AA C                                      AA  AAACCCGAAUUA
Stem-loop sequence GAGUACUUGAACUUUCAAAAUGCAUCAAAAAGACCCUCAAGCUUUCAAAAAAAGCAAUUAAGCCCAAACUAAUUGAGGGUCUUUUUGAUGCAUUUUGAAAGUUCAAGUACCCAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017749804.1
ncRNA:24   ACGUAAAACUUUCAAGUUCAUGAG   1
  |*=|||||||||||*||||||||*
targets:124   UUUAUUUUGAAAGUGCAAGUACUA   147

2.5 PREDICTED: Gossypium arboreum LOB domain-containing protein 4-like (LOC108452068), mRNA LOB domain-containing protein 4-like(LOC108452068) coding protein psRNATarget