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BaseInfo

ncRNA ID	novel_gar_miR1255
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr1:52655395-52655620 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180715
Length	24
Mature sequence(if miRNA)	1 - GUAACGGAGCUUAACGGUAGAGUG - 24
Stem-loop(if miRNA)	--       A    A     A       G   UG  A                       A              U         AGU  C   -A  GAAAAUAUGUUUUUAA   CUCUACC UUAA CUCUG UACCUCC UAA  GC GUCCUACGUGGUAGUCCAAAUGG UUUUAAAUGUCAAC UGGAUGUCU   UG UGG  AU                U   ||||||| |||| ||||| ||||||| |||  || ||||||||||||||||||||||| |||||||||||||| |||||||||   || |||  ||                U   GAGAUGG AAUU GAGGC AUGGAGG AUU  UG CAGGAUGCAUCGUUAGGUUUACC AAAAUUUACGGUUG AUCUACAGG   AC ACC  CA                A GU       C    C     A       G   GU  C                       C              U         -AU  -   GU  GGUUUAAUUUUAGAAA
Stem-loop sequence	CUCUACCAUUAAACUCUGAUACCUCCGUAAUGGCAGUCCUACGUGGUAGUCCAAAUGGAUUUUAAAUGUCAACUUGGAUGUCUAGUUGCUGGAAUGAAAAUAUGUUUUUAAUUAAAAGAUUUUAAUUUGGACUGCCACAUAGGACAUCUAUGUUGGCAUUUAAAACCCAUUUGGAUUGCUACGUAGGACCGUUGUUAGGGAGGUAACGGAGCUUAACGGUAGAGUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017753104.1	ncRNA:24   GUGAGAUGGCAAUUCGAGGCAAUG   1   |||*||||=|||||*||||||||| targets:1784   CACACUACUGUUAAACUCCGUUAC   1807 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum A-kinase anchor protein 7-like (LOC108454597), transcript variant X2, mRNA	A-kinase anchor protein 7-like(LOC108454597)	coding protein	psRNATarget
XM_017753103.1	ncRNA:24   GUGAGAUGGCAAUUCGAGGCAAUG   1   |||*||||=|||||*||||||||| targets:1729   CACACUACUGUUAAACUCCGUUAC   1752 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum A-kinase anchor protein 7-like (LOC108454597), transcript variant X1, mRNA	A-kinase anchor protein 7-like(LOC108454597)	coding protein	psRNATarget
XM_017753108.1	ncRNA:24   GUGAGAUGGCAAUUCGAGGCAAUG   1   |||*||||=|||||*||||||||| targets:1699   CACACUACUGUUAAACUCCGUUAC   1722 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum A-kinase anchor protein 7-like (LOC108454597), transcript variant X5, mRNA	A-kinase anchor protein 7-like(LOC108454597)	coding protein	psRNATarget
XM_017753107.1	ncRNA:24   GUGAGAUGGCAAUUCGAGGCAAUG   1   |||*||||=|||||*||||||||| targets:1681   CACACUACUGUUAAACUCCGUUAC   1704 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum A-kinase anchor protein 7-like (LOC108454597), transcript variant X4, mRNA	A-kinase anchor protein 7-like(LOC108454597)	coding protein	psRNATarget
XM_017753105.1	ncRNA:24   GUGAGAUGGCAAUUCGAGGCAAUG   1   |||*||||=|||||*||||||||| targets:1624   CACACUACUGUUAAACUCCGUUAC   1647 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum A-kinase anchor protein 7-like (LOC108454597), transcript variant X3, mRNA	A-kinase anchor protein 7-like(LOC108454597)	coding protein	psRNATarget
XM_017753109.1	ncRNA:24   GUGAGAUGGCAAUUCGAGGCAAUG   1   |||*||||=|||||*||||||||| targets:1594   CACACUACUGUUAAACUCCGUUAC   1617 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum A-kinase anchor protein 7-like (LOC108454597), transcript variant X6, mRNA	A-kinase anchor protein 7-like(LOC108454597)	coding protein	psRNATarget
XM_017753110.1	ncRNA:24   GUGAGAUGGCAAUUCGAGGCAAUG   1   |||*||||=|||||*||||||||| targets:1591   CACACUACUGUUAAACUCCGUUAC   1614 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum A-kinase anchor protein 7-like (LOC108454597), transcript variant X7, mRNA	A-kinase anchor protein 7-like(LOC108454597)	coding protein	psRNATarget