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BaseInfo

ncRNA ID novel_gar_miR1251
Species Gossypium arboreum
Class miRNA
Genome position Chr13:68382342-68382393 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180715
Length 24
Mature sequence(if miRNA) 29 - AAACGACGUCGUUUUGGGGCUGGC - 52
Stem-loop(if miRNA) --                   C GGC
  AAACGACGUCGUUUUGGGG U   U
  ||||||||||||||||||| |
  UUUGCUGCAGCAAAACCCC A   U
AC                   C AAU
Stem-loop sequence AAACGACGUCGUUUUGGGGCUGGCUUUAAACCCCCAAAACGACGUCGUUUCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017777049.1
ncRNA:24   CGGUCGGGGUUUUGCUGCAGCAAA   1
  *||**||||||||||||*||||||
targets:35   ACCUUCCCCAAAACGACAUCGUUU   58

1.5 PREDICTED: Gossypium arboreum uncharacterized LOC108475036 (LOC108475036), mRNA uncharacterized LOC108475036(LOC108475036) coding protein psRNATarget
XM_017780268.1
ncRNA:24   CGGUCGGGGUUUUGCUGCAGCAAA   1
  *=||**||||||||||||*|||||
targets:22   UUCAAACCCAAAACGACGCCGUUU   45

2.5 PREDICTED: Gossypium arboreum uncharacterized LOC108477773 (LOC108477773), mRNA uncharacterized LOC108477773(LOC108477773) coding protein psRNATarget