| ncRNA ID | novel_gar_miR1250 |
| Species | Gossypium arboreum |
| Class | miRNA |
| Genome position | Chr13:83193149-83193375 [-] |
| Reference genome | Gossypium_arboreum_v1.0 |
| Source | SRR3180715 |
| Length | 24 |
| Mature sequence(if miRNA) | 204 - AUUUGGUGCUGGCCUGUCAAUGGC - 227 |
| Stem-loop(if miRNA) |
--A U C A UAAUUUUU C C AAAU U -UUU A UUUGG GCUGGC UGUCAAUGGCCGGCACCAAAAUAUGAGUUUUU AAAAAA UUUGUGCUGGC UGUC AUGGCCGGCACCA ACG GUU UUAAAAAA U ||||| |||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||| |||| ||||||||||||| ||| ||| |||||||| AAACC CGACCG ACAGUUAUCGGCUGUGGUUUUAUGCUUAAAAA UUUUUU AAACACGACCG ACAG UACCGGCCGUGGU UGU CGA AGUUUUUU A AAA U C A -----UUU U U -AAC C UCGU A |
| Stem-loop sequence | AUUUGGUGCUGGCCUGUCAAUGGCCGGCACCAAAAUAUGAGUUUUUAAAAAAAUAAUUUUUUUUGUGCUGGCCUGUCCAUGGCCGGCACCAAAAUACGUGUUUUUUUAAAAAAAUAAUUUUUUGAUGCUAGCCUGUCAAUGGUGCCGGCCAUUGACAUGCCAGCACAAAUUUUUUUUUAAAAAAUUCGUAUUUUGGUGUCGGCUAUUGACACGCCAGCUCCAAAAAA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_017763681.1 |
|
2.0 | PREDICTED: Gossypium arboreum NHL repeat-containing protein 2 (LOC108463775), transcript variant X2, mRNA | NHL repeat-containing protein 2(LOC108463775) | coding protein | psRNATarget | |||||||||
| XM_017763680.1 |
|
2.0 | PREDICTED: Gossypium arboreum NHL repeat-containing protein 2 (LOC108463775), transcript variant X1, mRNA | NHL repeat-containing protein 2(LOC108463775) | coding protein | psRNATarget |