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BaseInfo

ncRNA ID novel_gar_miR1249
Species Gossypium arboreum
Class miRNA
Genome position Chr13:89951418-89951494 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180715
Length 21
Mature sequence(if miRNA) 1 - UCAUGGUCUUUAGCUGCGUUU - 21
Stem-loop(if miRNA) --    C                             GU
  GCGC GCUAAAGGCCAUGGCCUUUAGCGGCGUUU  A
  |||| |||||||||||||||||||||||||||||  G
  UGCG CGAUUUCUGGUACUGGAAAUCGCCGUGAA  G
UU    U                             AA
Stem-loop sequence GCGCCGCUAAAGGCCAUGGCCUUUAGCGGCGUUUGUAGGAAAAGUGCCGCUAAAGGUCAUGGUCUUUAGCUGCGUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017768625.1
ncRNA:21   UUUGCGUCGAUUUCUGGUACU   1
  *|||||*||||||*|||||||
targets:43   UAACGCUGCUAAAAACCAUGA   63

2.5 PREDICTED: Gossypium arboreum 26S proteasome non-ATPase regulatory subunit 2 homolog A-like (LOC108467830), mRNA 26S proteasome non-ATPase regulatory subunit 2 homolog A-like(LOC108467830) coding protein psRNATarget