Search result

BaseInfo

ncRNA ID	novel_gar_miR1248
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr3:45315388-45315432 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029586;SRR1029587
Length	21
Mature sequence(if miRNA)	25 - AAGGGGGCAAAAUGCAAUCUG - 45
Stem-loop(if miRNA)	----GACUAA            U           UUUGCCCCUUUU U           |||||||||||| A           AAACGGGGGAAA G GUCUAACGUA            U
Stem-loop sequence	GACUAAUUUGCCCCUUUUUUAGUAAAGGGGGCAAAAUGCAAUCUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017752799.1	ncRNA:21   GUCUAACGUAAAACGGGGGAA   1   =|||||||||||||||||||* targets:1946   UAGAUUGCAUUUUGCCCCCUC   1966 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum uncharacterized LOC108454360 (LOC108454360), transcript variant X2, mRNA	uncharacterized LOC108454360(LOC108454360)	coding protein	psRNATarget
XM_017752798.1	ncRNA:21   GUCUAACGUAAAACGGGGGAA   1   =|||||||||||||||||||* targets:1955   UAGAUUGCAUUUUGCCCCCUC   1975 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum uncharacterized LOC108454360 (LOC108454360), transcript variant X1, mRNA	uncharacterized LOC108454360(LOC108454360)	coding protein	psRNATarget
XM_017768432.1	ncRNA:21   GUCUAACGUAAAACGGGGGAA   1   |=*|||||||||||||||||* targets:2452   CGAAUUGCAUUUUGCCCCCUC   2472 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum tetratricopeptide repeat protein 7A-like (LOC108467698), transcript variant X2, mRNA	tetratricopeptide repeat protein 7A-like(LOC108467698)	coding protein	psRNATarget
XM_017768430.1	ncRNA:21   GUCUAACGUAAAACGGGGGAA   1   |=*|||||||||||||||||* targets:2707   CGAAUUGCAUUUUGCCCCCUC   2727 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum tetratricopeptide repeat protein 7A-like (LOC108467698), transcript variant X1, mRNA	tetratricopeptide repeat protein 7A-like(LOC108467698)	coding protein	psRNATarget
XM_017786952.1	ncRNA:21   GUCUAACGUAAAACGGGGGAA   1   |=|||||=|||||||=||||| targets:1991   CGGAUUGUAUUUUGCUCCCUU   2011 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum MACPF domain-containing protein NSL1-like (LOC108483506), mRNA	MACPF domain-containing protein NSL1-like(LOC108483506)	coding protein	psRNATarget
XM_017759173.1	ncRNA:21   GUCUAACGUAAAACGGGGGAA   1   |*||||||||||||||||=|* targets:2436   CUGAUUGCAUUUUGCCCCUUC   2456 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108459768 (LOC108459768), mRNA	uncharacterized LOC108459768(LOC108459768)	coding protein	psRNATarget