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BaseInfo

ncRNA ID novel_gar_miR1244
Species Gossypium arboreum
Class miRNA
Genome position Chr13:126695362-126695451 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180715;SRR3180721
Length 21
Mature sequence(if miRNA) 1 - UUCUUUAACUUGCCUUUGUCA - 21
Stem-loop(if miRNA) --  U                   A    AUCAAAUUACCCAAAC
  AC AAGGCAAGUUAAAGAAAAA AUUU                A
  || ||||||||||||||||||| ||||
  UG UUCCGUUCAAUUUCUUUUU UAAA                A
AC  U                   C    CAAAAAAAUUUACUUA
Stem-loop sequence ACUAAGGCAAGUUAAAGAAAAAAAUUUAUCAAAUUACCCAAACAAAUUCAUUUAAAAAAACAAAUCUUUUUCUUUAACUUGCCUUUGUCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017779187.1
ncRNA:21   ACUGUUUCCGUUCAAUUUCUU   1
  *|=||||||||||||||||||
targets:250   GGGCAAAGGCAAGUUAAAGAA   270

1.0 PREDICTED: Gossypium arboreum uncharacterized LOC108476830 (LOC108476830), mRNA uncharacterized LOC108476830(LOC108476830) coding protein psRNATarget
XM_017782758.1
ncRNA:21   ACUGUUUCCGUUCAAUUUCUU   1
  *|=||||||||||||||||||
targets:239   GGGCAAAGGCAAGUUAAAGAA   259

1.0 PREDICTED: Gossypium arboreum uncharacterized LOC108479909 (LOC108479909), mRNA uncharacterized LOC108479909(LOC108479909) coding protein psRNATarget