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BaseInfo

ncRNA ID	novel_gar_miR1227
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr1:85030352-85030573 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180715
Length	24
Mature sequence(if miRNA)	199 - UUCCUGUACAUUAGAUUAAAGAGC - 222
Stem-loop(if miRNA)	--   C               A A  U   UG  -CAUUCUU             CA    C   UAG      ---------------------CUAUUUCU     AUUAAUAUGACGUA   UUC UGUACAUUAGAUUAA G GC AAU  AU        UUGAAAAUUUCAU  AUUU UAC   UAAAAA                             UGUAC              C   ||| ||||||||||||||| | || |||  ||        |||||||||||||  |||| |||   ||||||                             |||||   AAG ACAUGUAAUUUAGUU C CG UUA  UA        AAUUUUUAAAGUA  UAAA AUG   AUUUUU                             ACUGU              A UC   U               A C  U   GU  AAAAAAAC             AG    U   UCA      AAUCGCACUGACUACUUUAUUGUUCUAUA     ACAUUACACGGUAU
Stem-loop sequence	UUCCUGUACAUUAGAUUAAAGAGCUAAUUGAUCAUUCUUUUGAAAAUUUCAUCAAUUUCUACUAGUAAAAACUAUUUCUUGUACAUUAAUAUGACGUACAUAUGGCACAUUACAUGUCAAUAUCUUGUUAUUUCAUCAGUCACGCUAAUUUUUAACUGUAUAAAUGAAUGAAAUUUUUAACAAAAAAAAUUGAUUUGCCCAUUGAUUUAAUGUACAUGAACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017754991.1	ncRNA:24   CGAGAAAUUAGAUUACAUGUCCUU   1   |||=|||*|||||||||||||||| targets:1657   GCUUUUUUAUCUAAUGUACAGGAA   1680 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum ethanolamine-phosphate cytidylyltransferase-like (LOC108456383), transcript variant X3, mRNA	ethanolamine-phosphate cytidylyltransferase-like(LOC108456383)	coding protein	psRNATarget
XM_017785540.1	ncRNA:24   CGAGAAAUUAGAUUACAUGUCCUU   1   *||=||||||=||=|||||||||| targets:1136   ACUUUUUAAUUUAGUGUACAGGAA   1159 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108482412 (LOC108482412), mRNA	uncharacterized LOC108482412(LOC108482412)	coding protein	psRNATarget
XM_017783891.1	ncRNA:24   CGAGAAAUUAGAUUACAUGUCCUU   1   *||=|||||*||||||||||*||| targets:956   ACUUUUUAAGCUAAUGUACAUGAA   979 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum nudix hydrolase 25 (LOC108480791), mRNA	nudix hydrolase 25(LOC108480791)	coding protein	psRNATarget