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BaseInfo

ncRNA ID	novel_gar_miR1216
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr1:1441884-1442046 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180715;SRR3180720;SRR1029586;SRR1029587
Length	21
Mature sequence(if miRNA)	1 - UUGGUACCUAAACUUGGCAAC - 21
Stem-loop(if miRNA)	--       CUA             ----A   UAUUUAGUCAUUUUGGUCCAUGGACUUGACAAAUGGAAAAGUUUAAUGAU   UUGGUAC   AACUUGGCAACUA     GCU                                                  G   |||||||   |||||||||||||     |||                                                  U   AACCAUG   UUGAAUUGUUGAU     UAA                                                  G AA       UAC             CUAGA   AAUCAGGAACUUGAACUUAAGAUAGUUUCAAACUUCCACACCGUGUUACG
Stem-loop sequence	UUGGUACCUAAACUUGGCAACUAAGCUUAUUUAGUCAUUUUGGUCCAUGGACUUGACAAAUGGAAAAGUUUAAUGAUGUGGCAUUGUGCCACACCUUCAAACUUUGAUAGAAUUCAAGUUCAAGGACUAAAAUAGAUCUAGUUGUUAAGUUCAUGUACCAAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017768154.1	ncRNA:21   CAACGGUUCAAAUCCAUGGUU   1   ||||||||||||||||*|||| targets:2383   GUUGCCAAGUUUAGGUCCCAA   2403 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum F-box protein At5g06550 (LOC108467515), transcript variant X4, mRNA	F-box protein At5g06550(LOC108467515)	coding protein	psRNATarget
XM_017768153.1	ncRNA:21   CAACGGUUCAAAUCCAUGGUU   1   ||||||||||||||||*|||| targets:2479   GUUGCCAAGUUUAGGUCCCAA   2499 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum F-box protein At5g06550 (LOC108467515), transcript variant X2, mRNA	F-box protein At5g06550(LOC108467515)	coding protein	psRNATarget
XM_017772735.1	ncRNA:21   CAACGGUUCAAAUCCAUGGUU   1   |**|*||=||||||||||||| targets:1524   GGAGGCAGGUUUAGGUACCAA   1544 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum S-adenosylmethionine synthase 1-like (LOC108471143), mRNA	S-adenosylmethionine synthase 1-like(LOC108471143)	coding protein	psRNATarget