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BaseInfo

ncRNA ID novel_gar_miR1210
Species Gossypium arboreum
Class miRNA
Genome position Chr12:9217244-9217359 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180715
Length 23
Mature sequence(if miRNA) 94 - UUUGACAAUUGUUCUCAUGUGAA - 116
Stem-loop(if miRNA) --                    -GAA        UUUU             CAUGA    U
  UUUGACAAUUGUUCUCAUGU    GCCUAAAU    UUUUUUGUCCAAC     UUUU U
  ||||||||||||||||||||    ||||||||    |||||||||||||     ||||
  GAAUUGUUAAUAAGGGUGUA    CGGAUUUA    AAAAAACAGGUUG     AAAA U
UU                    AUUA        ---U             --AAA    U
Stem-loop sequence UUUGACAAUUGUUCUCAUGUGAAGCCUAAAUUUUUUUUUUUGUCCAACCAUGAUUUUUUUUAAAAAAAGUUGGACAAAAAAUAUUUAGGCAUUAAUGUGGGAAUAAUUGUUAAGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017759793.1
ncRNA:23   AAG---UGUACUCUUGUUAACAGUUU   1
  *||---|=||||||||||||||||||
targets:1040   AUCCCAAUAUGAGAACAAUUGUCAAA   1065

1.0 PREDICTED: Gossypium arboreum uncharacterized LOC108460338 (LOC108460338), mRNA uncharacterized LOC108460338(LOC108460338) coding protein psRNATarget