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BaseInfo

ncRNA ID	novel_gar_miR1181
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr11:34812458-34812639 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180715
Length	24
Mature sequence(if miRNA)	159 - GUAACGGAGUUUAACGGUAGAGUG - 182
Stem-loop(if miRNA)	--  A            A                    CC     --     A       -------UAAA    UUUAAUUAAAAACUUAUUUUC   CU UAUCGUUAAGCU CGUUACCUCCCUAACGGCAG  UUCUA  UGGCA UCCAAAU           UUUA                     A   || |||||||||||| ||||||||||||||||||||  |||||  ||||| |||||||           ||||                     U   GA AUGGCAAUUUGA GCAAUGGAGGGAUUGUCGUC  AAGAU  ACCGU AGGUUUA           CGUU                     C GU  G            G                    --     AC     C       CCCAAAAUUUA    UGAAUCUACAGAUCAACGACC
Stem-loop sequence	CUAUAUCGUUAAGCUACGUUACCUCCCUAACGGCAGCCUUCUAUGGCAAUCCAAAUUAAAUUUAUUUAAUUAAAAACUUAUUUUCAUCCCAGCAACUAGACAUCUAAGUUUGCAUUUAAAACCCAUUUGGACUGCCACAUAGAACUGCUGUUAGGGAGGUAACGGAGUUUAACGGUAGAGUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017753110.1	ncRNA:24   GUGAGAUGGCAAUUUGAGGCAAUG   1   |||*||||=||||||||||||||| targets:1591   CACACUACUGUUAAACUCCGUUAC   1614 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum A-kinase anchor protein 7-like (LOC108454597), transcript variant X7, mRNA	A-kinase anchor protein 7-like(LOC108454597)	coding protein	psRNATarget
XM_017753109.1	ncRNA:24   GUGAGAUGGCAAUUUGAGGCAAUG   1   |||*||||=||||||||||||||| targets:1594   CACACUACUGUUAAACUCCGUUAC   1617 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum A-kinase anchor protein 7-like (LOC108454597), transcript variant X6, mRNA	A-kinase anchor protein 7-like(LOC108454597)	coding protein	psRNATarget
XM_017753105.1	ncRNA:24   GUGAGAUGGCAAUUUGAGGCAAUG   1   |||*||||=||||||||||||||| targets:1624   CACACUACUGUUAAACUCCGUUAC   1647 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum A-kinase anchor protein 7-like (LOC108454597), transcript variant X3, mRNA	A-kinase anchor protein 7-like(LOC108454597)	coding protein	psRNATarget
XM_017753107.1	ncRNA:24   GUGAGAUGGCAAUUUGAGGCAAUG   1   |||*||||=||||||||||||||| targets:1681   CACACUACUGUUAAACUCCGUUAC   1704 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum A-kinase anchor protein 7-like (LOC108454597), transcript variant X4, mRNA	A-kinase anchor protein 7-like(LOC108454597)	coding protein	psRNATarget
XM_017753108.1	ncRNA:24   GUGAGAUGGCAAUUUGAGGCAAUG   1   |||*||||=||||||||||||||| targets:1699   CACACUACUGUUAAACUCCGUUAC   1722 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum A-kinase anchor protein 7-like (LOC108454597), transcript variant X5, mRNA	A-kinase anchor protein 7-like(LOC108454597)	coding protein	psRNATarget
XM_017753103.1	ncRNA:24   GUGAGAUGGCAAUUUGAGGCAAUG   1   |||*||||=||||||||||||||| targets:1729   CACACUACUGUUAAACUCCGUUAC   1752 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum A-kinase anchor protein 7-like (LOC108454597), transcript variant X1, mRNA	A-kinase anchor protein 7-like(LOC108454597)	coding protein	psRNATarget
XM_017753104.1	ncRNA:24   GUGAGAUGGCAAUUUGAGGCAAUG   1   |||*||||=||||||||||||||| targets:1784   CACACUACUGUUAAACUCCGUUAC   1807 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum A-kinase anchor protein 7-like (LOC108454597), transcript variant X2, mRNA	A-kinase anchor protein 7-like(LOC108454597)	coding protein	psRNATarget