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BaseInfo

ncRNA ID	novel_gar_miR1178
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr11:26464546-26464626 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180715;SRR3180719;SRR3180721
Length	22
Mature sequence(if miRNA)	1 - CUGUCGCAGGGGAGAUGGCUGG - 22
Stem-loop(if miRNA)	--         GG       C    C   U     CU   CU   CUGUCGCAG  GAGAUGG UGGU CAU CAUGC  AUG  A   |||||||||  ||||||| |||| ||| |||||  |||   GACAGUGUU  CUCUACC ACUA GUA GUACG  UAC  U AA         -A       A    C   U     --   CG
Stem-loop sequence	CUGUCGCAGGGGAGAUGGCUGGUCCAUUCAUGCCUAUGCUAUGCCAUGCAUGUAUGCAUCAACCAUCUCAUUGUGACAGAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017750614.1	ncRNA:22   GGUCGGUAGAGGGGACGCUGUC   1   ==||||*||||||=|||||||| targets:328   UUAGCCUUCUCCCUUGCGACAG   349 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum calcium-transporting ATPase 9, plasma membrane-type (LOC108452831), transcript variant X2, mRNA	calcium-transporting ATPase 9, plasma membrane-type(LOC108452831)	coding protein	psRNATarget
XM_017750615.1	ncRNA:22   GGUCGGUAGAGGGGACGCUGUC   1   ==||||*||||||=|||||||| targets:573   UUAGCCUUCUCCCUUGCGACAG   594 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum calcium-transporting ATPase 9, plasma membrane-type (LOC108452831), transcript variant X3, mRNA	calcium-transporting ATPase 9, plasma membrane-type(LOC108452831)	coding protein	psRNATarget
XM_017750613.1	ncRNA:22   GGUCGGUAGAGGGGACGCUGUC   1   ==||||*||||||=|||||||| targets:573   UUAGCCUUCUCCCUUGCGACAG   594 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum calcium-transporting ATPase 9, plasma membrane-type (LOC108452831), transcript variant X1, mRNA	calcium-transporting ATPase 9, plasma membrane-type(LOC108452831)	coding protein	psRNATarget