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BaseInfo

ncRNA ID novel_gar_miR1169
Species Gossypium arboreum
Class miRNA
Genome position Chr11:34966383-34966477 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180715
Length 24
Mature sequence(if miRNA) 1 - AUCCGAGCUUUGUCAUGUUGAAUC - 24
Stem-loop(if miRNA) --UUA          UU C   --U    -A   CCU      U  UAG
     GACAUGAUAG  C UGG   UUAC  GUU   AUUUUA AU   A
     ||||||||||  | |||   ||||  |||   |||||| ||
     UUGUACUGUU  G GCC   AGUG  CAA   UAAAAU UA   U
CUAAG          UC A   UAC    AA   UCU      U  UUA
Stem-loop sequence UUAGACAUGAUAGUUCCUGGUUUACAGUUCCUAUUUUAUAUUAGAUAUUAUUUAAAAUUCUAACAAGUGACAUCCGAGCUUUGUCAUGUUGAAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017757571.1
ncRNA:24   CUA------AGUUGUACUGUUUCGAGCCUA   1
  |||------||||*=||||||||||||||*
targets:298   GAUCGGAGCUCAAAGUGACAAAGCUCGGAA   327

3.0 PREDICTED: Gossypium arboreum uncharacterized oxidoreductase At1g06690, chloroplastic (LOC108458251), mRNA uncharacterized oxidoreductase At1g06690, chloroplastic(LOC108458251) coding protein psRNATarget