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BaseInfo

ncRNA ID novel_gar_miR1168
Species Gossypium arboreum
Class miRNA
Genome position Chr11:35295062-35295145 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180715
Length 21
Mature sequence(if miRNA) 64 - AUAAAAUACUGAUGUGACAUA - 84
Stem-loop(if miRNA) --                   UAAU       ---        UU
  AUAAAAUACUGAUGUGACA    UGAUCAA   AUAUUAAA  G
  |||||||||||||||||||    |||||||   ||||||||  U
  UAUUUUAUGAUUGCACUGU    ACUAGUU   UAUGAUUU  G
UG                   ----       GAU        UA
Stem-loop sequence AUAAAAUACUGAUGUGACAUAAUUGAUCAAAUAUUAAAUUGUGAUUUUAGUAUUAGUUGAUCAUGUCACGUUAGUAUUUUAUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017778083.1
ncRNA:21   AUACAGUGUAGUCAUAAAAUA   1
  |=|*|||*|||||||||||||
targets:1717   UGUAUCAAAUCAGUAUUUUAU   1737

2.0 PREDICTED: Gossypium arboreum 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic-like (LOC108476030), mRNA 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic-like(LOC108476030) coding protein psRNATarget