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BaseInfo

ncRNA ID novel_gar_miR1166
Species Gossypium arboreum
Class miRNA
Genome position Chr10:92100747-92100825 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180715
Length 22
Mature sequence(if miRNA) 58 - UUUCCAAUUCCUCCCAUUCCAC - 79
Stem-loop(if miRNA) --       -                  GA   UUCUCUG
  GGAAUGG AGGAGUUGGAAAGAUUUU  AUU       U
  ||||||| ||||||||||||||||||  |||
  CCUUACC UCCUUAACCUUUCUAAAA  UAA       A
CA       C                  AG   UAAUUUU
Stem-loop sequence GGAAUGGAGGAGUUGGAAAGAUUUUGAAUUUUCUCUGUAUUUUAAUAAUGAAAAAUCUUUCCAAUUCCUCCCAUUCCAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017749243.1
ncRNA:22   CACCUUACCCUCCUUAACCUUU   1
  ||||||||||||||||||||||
targets:2461   GUGGAAUGGGAGGAAUUGGAAA   2482

0.0 PREDICTED: Gossypium arboreum zinc finger CCCH domain-containing protein 15-like (LOC108451570), mRNA zinc finger CCCH domain-containing protein 15-like(LOC108451570) coding protein psRNATarget