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BaseInfo

ncRNA ID novel_gar_miR1164
Species Gossypium arboreum
Class miRNA
Genome position Chr11:61382888-61382969 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180715
Length 21
Mature sequence(if miRNA) 1 - CUUAGAUAUUUUGGUAAAAGC - 21
Stem-loop(if miRNA) --                                      A
  UUUUACCAAAAUAUCUAAGGAUUUACCAAAAUUUCUAA G
  ||||||||||||||||||||||||||||||||||||||
  AAAAUGGUUUUAUAGAUUCCUAAAUGGUUUUAAAGAUU U
CG                                      G
Stem-loop sequence UUUUACCAAAAUAUCUAAGGAUUUACCAAAAUUUCUAAAGUGUUAGAAAUUUUGGUAAAUCCUUAGAUAUUUUGGUAAAAGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017747372.1
ncRNA:21   CGAAAAUGGUUUUAUAGAUUC   1
  *||||||||||||||||||**
targets:116   UCUUUUACCAAAAUAUCUACA   136

2.5 PREDICTED: Gossypium arboreum probable GTP-binding protein OBGC2 (LOC108449970), mRNA probable GTP-binding protein OBGC2(LOC108449970) coding protein psRNATarget
XM_017747858.1
ncRNA:21   CGAAAAUGGUUUUAUAGAUUC   1
  *=*|||||*||||||||||||
targets:1239   UUGUUUACAAAAAUAUCUAAG   1259

2.5 PREDICTED: Gossypium arboreum gibberellin 2-beta-dioxygenase 8 (LOC108450299), mRNA gibberellin 2-beta-dioxygenase 8(LOC108450299) coding protein psRNATarget