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BaseInfo

ncRNA ID	ath-miRf11056-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - GAGAGGAGAGAGUCUUUGUU - NA
Stem-loop(if miRNA)	UCU                C  UG       AAGUGAAGAGAA G  CAAUUUGCAGA GAA   AAGGAGAGGAGAGAGU UU  UUGGGAA            U UG           C |||   |||||||||||||||| ||  |||||||            | ||           U CUU   UUUCUUUCUUUUCUCA AA  GGCUCUU            C GG           A    --U                U  UU       ----------AG -  CCACCGAAAUU
Stem-loop sequence	GAAUCUAAGGAGAGGAGAGAGUCUUUGUUGGGAAAAGUGAAGAGAAUGUGCAAUUUGCAGACUAUUAAAGCCACCGGCGAUUCUCGGUUAAUACUCUUUUCUUUCUUUUUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_114670.2	ncRNA:20   UUGUUUCUGAGAGAGGAGAG   1   =|||*||=|||||||||||| targets:11   GACACAGGCUCUCUCCUCUC   30 Target Full Sequence	2.5	Arabidopsis thaliana cyclic nucleotide-gated channel 16 (CNGC16), mRNA	cyclic nucleotide-gated channel 16(CNGC16)	coding protein	psRNATarget
NM_128995.3	ncRNA:20   UUGUUUCUGAGAGAGGAGAG   1   =||||*|=|||||||||||| targets:223   GACAAUGGCUCUCUCCUCUC   242 Target Full Sequence	2.5	Arabidopsis thaliana light-harvesting chlorophyll-protein complex II subunit B1 (LHB1B1), mRNA	light-harvesting chlorophyll-protein complex II subunit B1(LHB1B1)	coding protein	psRNATarget
AF326864.1	ncRNA:20   UUGUUUCUGAGAGAGGAGAG   1   =||||*|=|||||||||||| targets:74   GACAAUGGCUCUCUCCUCUC   93 Target Full Sequence	2.5	Arabidopsis thaliana putative photosystem II type I chlorophyll a/b binding protein (At2g34430) mRNA, complete cds	NA	coding protein	psRNATarget
AF324693.2	ncRNA:20   UUGUUUCUGAGAGAGGAGAG   1   =||||*|=|||||||||||| targets:74   GACAAUGGCUCUCUCCUCUC   93 Target Full Sequence	2.5	Arabidopsis thaliana At2g34430 (At2g34430/T31E10.23) mRNA, complete cds	NA	coding protein	psRNATarget
AY120776.1	ncRNA:20   UUGUUUCUGAGAGAGGAGAG   1   =||||*|=|||||||||||| targets:74   GACAAUGGCUCUCUCCUCUC   93 Target Full Sequence	2.5	Arabidopsis thaliana putative photosystem II type I chlorophyll a/b binding protein. (At2g34430) mRNA, complete cds	NA	coding protein	psRNATarget
AY086307.1	ncRNA:20   UUGUUUCUGAGAGAGGAGAG   1   =||||*|=|||||||||||| targets:74   GACAAUGGCUCUCUCCUCUC   93 Target Full Sequence	2.5	Arabidopsis thaliana clone 23727 mRNA, complete sequence	NA	coding protein	psRNATarget
BT002103.1	ncRNA:20   UUGUUUCUGAGAGAGGAGAG   1   =||||*|=|||||||||||| targets:12   GACAAUGGCUCUCUCCUCUC   31 Target Full Sequence	2.5	Arabidopsis thaliana putative photosystem II type I chlorophyll a/b binding protein. (At2g34430) mRNA, complete cds	NA	coding protein	psRNATarget
AF339687.1	ncRNA:20   UUGUUUCUGAGAGAGGAGAG   1   =||||*|=|||||||||||| targets:12   GACAAUGGCUCUCUCCUCUC   31 Target Full Sequence	2.5	Arabidopsis thaliana putative photosystem II type I chlorophyll a/b binding protein (At2g34430) mRNA, complete cds	NA	coding protein	psRNATarget