Search result

BaseInfo

ncRNA ID novel_gar_miR1151
Species Gossypium arboreum
Class miRNA
Genome position Chr8:66709258-66709339 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180715;SRR3180720
Length 21
Mature sequence(if miRNA) 1 - ACUUUCUAAAUUAUUCCCAUG - 21
Stem-loop(if miRNA) --         A      C AU      UUUC      CUCA
  ACUUUCUAA UUAUUC C  GUGAGU    CCACUU    U
  ||||||||| |||||| |  ||||||    ||||||    A
  UGAAAGAUU AAUAAG G  CACUCA    GGUGAA    G
AU         G      U CC      ---U      UACC
Stem-loop sequence ACUUUCUAAAUUAUUCCCAUGUGAGUUUUCCCACUUCUCAUAGCCAUAAGUGGUACUCACCCGUGAAUAAGUUAGAAAGUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017772260.1
ncRNA:21   GUACCCUUAUUAAAUCUUUCA   1
  *=|||*||||||||||||=||
targets:874   GGUGGAAAUAAUUUAGAAGGU   894

2.5 PREDICTED: Gossypium arboreum probable LRR receptor-like serine/threonine-protein kinase At3g47570 (LOC108470790), mRNA probable LRR receptor-like serine/threonine-protein kinase At3g47570(LOC108470790) coding protein psRNATarget