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BaseInfo

ncRNA ID novel_gar_miR1150
Species Gossypium arboreum
Class miRNA
Genome position Chr8:54920796-54920880 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180715
Length 24
Mature sequence(if miRNA) 1 - AAAUGACCUGUUUUGAAUAGUAAC - 24
Stem-loop(if miRNA) --A                      CC       C     UU
   AAUGACCUGUUUUGAAUAGUAA  UUCGGUG CGUCA  G
   ||||||||||||||||||||||  ||||||| |||||  C
   UUACUGGAUAAAACUUAUCAUU  AAGUCAU GCAGU  C
UUC                      UA       A     UA
Stem-loop sequence AAAUGACCUGUUUUGAAUAGUAACCUUCGGUGCCGUCAUUGCCAUUGACGAUACUGAAAUUUACUAUUCAAAAUAGGUCAUUCUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017748601.1
ncRNA:24   CAAUGAUAAGUUUUGUCCAGUAAA   1
  |||--|||*|||||||||||||*|
targets:1441   GUU--UAUGCAAAACAGGUCAUAU   1462

2.5 PREDICTED: Gossypium arboreum pentatricopeptide repeat-containing protein At1g63330-like (LOC108450829), mRNA pentatricopeptide repeat-containing protein At1g63330-like(LOC108450829) coding protein psRNATarget