ncRNA ID | novel_gar_miR1150 |
Species | Gossypium arboreum |
Class | miRNA |
Genome position | Chr8:54920796-54920880 [+] |
Reference genome | Gossypium_arboreum_v1.0 |
Source | SRR3180715 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AAAUGACCUGUUUUGAAUAGUAAC - 24 |
Stem-loop(if miRNA) |
--A                      CC       C     UU    AAUGACCUGUUUUGAAUAGUAA  UUCGGUG CGUCA  G    ||||||||||||||||||||||  ||||||| |||||  C    UUACUGGAUAAAACUUAUCAUU  AAGUCAU GCAGU  C UUC                      UA       A     UA |
Stem-loop sequence | AAAUGACCUGUUUUGAAUAGUAACCUUCGGUGCCGUCAUUGCCAUUGACGAUACUGAAAUUUACUAUUCAAAAUAGGUCAUUCUU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_017748601.1 |
|
2.5 | PREDICTED: Gossypium arboreum pentatricopeptide repeat-containing protein At1g63330-like (LOC108450829), mRNA | pentatricopeptide repeat-containing protein At1g63330-like(LOC108450829) | coding protein | psRNATarget |