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BaseInfo

ncRNA ID novel_gar_miR1143
Species Gossypium arboreum
Class miRNA
Genome position Chr8:51048774-51048980 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180715;SRR3180719;SRR3180720
Length 24
Mature sequence(if miRNA) 1 - AUUUGCUCUUUGAUCUAACGUACA - 24
Stem-loop(if miRNA) --       AG                  AUUU   A      AA          C       -------AAA   UG  AUGGUUGAUGAAAUAACCAAACAAUUACA
  UACGUUA  UUAAAGAGCAAAUUGGUC    UUA UAAAAA  UCAUCUAUUU UACUGUU          CAU  AC                             C
  |||||||  ||||||||||||||||||    ||| ||||||  |||||||||| |||||||          |||  ||
  AUGCAAU  AGUUUCUCGUUUAAUUAG    GAU AUUUUU  AGUAGGUAAA AUGACGA          GGU  AU                             A
AC       CU                  ----   A      AA          A       AUUUAAACCA   AC  ACAAUCGUAUUCCAUGUGCACCGUGUGGU
Stem-loop sequence UACGUUAAGUUAAAGAGCAAAUUGGUCAUUUUUAAUAAAAAAAUCAUCUAUUUCUACUGUUAAACAUUGACAUGGUUGAUGAAAUAACCAAACAAUUACACAUGGUGUGCCACGUGUACCUUAUGCUAACAUACAUGGACCAAAUUUAAGCAGUAAAAAUGGAUGAAAUUUUUAAUAGGAUUAAUUUGCUCUUUGAUCUAACGUACA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017777449.1
ncRNA:24   ACAUGCAAUCUAGUUUCUCGUUUA   1
  *||||||||*||||||||||||||
targets:1625   AGUACGUUAAAUCAAAGAGCAAAU   1648

1.0 PREDICTED: Gossypium arboreum cytochrome P450 71D10-like (LOC108475481), mRNA cytochrome P450 71D10-like(LOC108475481) coding protein psRNATarget
XM_017754696.1
ncRNA:24   ACAUGCAAUCUAGUUUCUCGUUUA   1
  |*||*||||*||||||||||||||
targets:1366   UAUAAGUUAUAUCAAAGAGCAAAU   1389

1.0 PREDICTED: Gossypium arboreum uncharacterized protein DDB_G0271670 (LOC108456101), transcript variant X1, mRNA uncharacterized protein DDB_G0271670(LOC108456101) coding protein psRNATarget
XM_017754697.1
ncRNA:24   ACAUGCAAUCUAGUUUCUCGUUUA   1
  |*||*||||*||||||||||||||
targets:1366   UAUAAGUUAUAUCAAAGAGCAAAU   1389

1.0 PREDICTED: Gossypium arboreum uncharacterized protein DDB_G0271670 (LOC108456101), transcript variant X2, mRNA uncharacterized protein DDB_G0271670(LOC108456101) coding protein psRNATarget
XM_017760336.1
ncRNA:24   ACAUGCAAUCUAGUUUCUCGUUUA   1
  ||||||||||||||||*|||||||
targets:2144   UGUACGUUAGAUCAAAAAGCAAAU   2167

1.5 PREDICTED: Gossypium arboreum protein NRT1/ PTR FAMILY 8.3-like (LOC108460726), transcript variant X1, mRNA protein NRT1/ PTR FAMILY 8.3-like(LOC108460726) coding protein psRNATarget
XM_017760338.1
ncRNA:24   ACAUGCAAUCUAGUUUCUCGUUUA   1
  ||||||||||||||||*|||||||
targets:2240   UGUACGUUAGAUCAAAAAGCAAAU   2263

1.5 PREDICTED: Gossypium arboreum protein NRT1/ PTR FAMILY 8.3-like (LOC108460726), transcript variant X2, mRNA protein NRT1/ PTR FAMILY 8.3-like(LOC108460726) coding protein psRNATarget
XM_017752094.1
ncRNA:24   ACAUGCAAUCUAGUUUCUCGUUUA   1
  |*|||||||||||||||||=||||
targets:1110   UAUACGUUAGAUCAAAGAGUAAAU   1133

1.5 PREDICTED: Gossypium arboreum universal stress protein PHOS32-like (LOC108453792), transcript variant X3, mRNA universal stress protein PHOS32-like(LOC108453792) coding protein psRNATarget
XM_017785103.1
ncRNA:24   ACAUGCAAUCUAGUUUCUCGUUUA   1
  |*||=||||||||||*||||||||
targets:916   UAUAUGUUAGAUCAAUGAGCAAAU   939

1.5 PREDICTED: Gossypium arboreum actin-related protein 2/3 complex subunit 5A-like (LOC108481997), mRNA actin-related protein 2/3 complex subunit 5A-like(LOC108481997) coding protein psRNATarget
XM_017784452.1
ncRNA:21   UGCAAUCUAGUUUCUCGUUUA   1
  |=|||||||||||||||||*|
targets:1   AUGUUAGAUCAAAGAGCAAUU   21

1.5 PREDICTED: Gossypium arboreum myb-related protein 305-like (LOC108481300), mRNA myb-related protein 305-like(LOC108481300) coding protein psRNATarget
XM_017749617.1
ncRNA:24   ACAUGCAAUCUAGUUUCUCGUUUA   1
  |||||||||*|||||||||||=||
targets:815   UGUACGUUAAAUCAAAGAGCAGAU   838

2.5 PREDICTED: Gossypium arboreum DNA polymerase zeta processivity subunit (LOC108451912), transcript variant X2, mRNA DNA polymerase zeta processivity subunit(LOC108451912) coding protein psRNATarget
XM_017749616.1
ncRNA:24   ACAUGCAAUCUAGUUUCUCGUUUA   1
  |||||||||*|||||||||||=||
targets:851   UGUACGUUAAAUCAAAGAGCAGAU   874

2.5 PREDICTED: Gossypium arboreum DNA polymerase zeta processivity subunit (LOC108451912), transcript variant X1, mRNA DNA polymerase zeta processivity subunit(LOC108451912) coding protein psRNATarget
XM_017757940.1
ncRNA:24   ACAUGCAAUCUAGUUUCUCGUUUA   1
  ||||||||||||*||||||||||*
targets:1045   UGUACGUUAGAUAAAAGAGCAAAC   1068

2.5 PREDICTED: Gossypium arboreum uncharacterized LOC108458516 (LOC108458516), mRNA uncharacterized LOC108458516(LOC108458516) coding protein psRNATarget
XM_017784090.1
ncRNA:24   ACAUGCAAUCUAGUUUCUCGUUUA   1
  ||||||||||||||||*||||||*
targets:1322   UGUACGUUAGAUCAAAAAGCAAAC   1345

2.5 PREDICTED: Gossypium arboreum uncharacterized LOC108480941 (LOC108480941), transcript variant X1, mRNA uncharacterized LOC108480941(LOC108480941) coding protein psRNATarget
XM_017755316.1
ncRNA:24   ACAUGCAAUCUAGUUUCUCGUUUA   1
  ||||-||||||||||||||=|||*
targets:1196   UGUA-GUUAGAUCAAAGAGUAAAC   1218

2.5 PREDICTED: Gossypium arboreum lon protease-like (LOC108456709), mRNA lon protease-like(LOC108456709) coding protein psRNATarget
XM_017766788.1
ncRNA:24   ACAUGCAAUCUAGUUUCUCGUUUA   1
  |*|||*|||||||||||||||=||
targets:1100   UAUACAUUAGAUCAAAGAGCAGAU   1123

2.5 PREDICTED: Gossypium arboreum uncharacterized LOC108466432 (LOC108466432), mRNA uncharacterized LOC108466432(LOC108466432) coding protein psRNATarget
XM_017776106.1
ncRNA:24   ACAUGCAAUCUAGUUUCUCGUUUA   1
  ***|||||||||=||||||||||*
targets:649   CUAACGUUAGAUUAAAGAGCAAAC   672

2.5 PREDICTED: Gossypium arboreum serine/threonine-protein kinase D6PKL1 (LOC108474182), transcript variant X2, mRNA serine/threonine-protein kinase D6PKL1(LOC108474182) coding protein psRNATarget
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