| ncRNA ID | ath-miR840-5p |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr2:771337-771562 [-] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 22 |
| Mature sequence(if miRNA) | 156 - ACACUGAAGGACCUAAACUAAC - 177 |
| Stem-loop(if miRNA) |
--- G GUGA - U UUUACAUC A C A U C C G GG UA C UUU CGUAAA CAG UUCA CCAAU UAGG CAC GUGUGGAAGA ACUGA GGACCUAAAC AACAAAGGUAAA GG UCA UGUGCGG UAU CA UCGG A |||||| ||| |||| ||||| |||| ||| |||||||||| ||||| |||||||||| |||||||||||| || ||| ||||||| ||| || |||| GUAUUU GUC GAGU GGUUA GUCC GUG CAUAUCUUCU UGAUU CCUGGAUUUG UUGUUUCUAUUU UC AGU GCACGCC AUA GU AGUC A CCA G ---- A U UAACCUAA C U C U C U A UA GC A UGU |
| Stem-loop sequence | CGUAAAGCAGGUGAUUCACCAAUUUAGGUUUACAUCCACAGUGUGGAAGACACUGAAGGACCUAAACUAACAAAGGUAAACGGCUCAGUGUGCGGGGUAUUACACUCGGUUUAAUGUCUGAAUGCGAUAAUCCGCACGAUGAUCUCUUUAUCUUUGUUUGUUUAGGUCCCUUAGUUUCUUCUAUACCGUGAAUCCAAUCCUGUAUUGGAUGAGCUGGUUUAUGACC |
| 1 | PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006). |
| 2 | PMID:17299599
"High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"; Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC; PLoS One. 2:e219(2007). |
| 3 | PMID:24119003
"Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots"; Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutierrez RA; BMC Genomics. 14:701(2013). |