Search result

BaseInfo

ncRNA ID	novel_gar_miR1142
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr10:8234258-8234359 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029586
Length	24
Mature sequence(if miRNA)	79 - AAUUGGGCUGUGUGGGCCACACGG - 102
Stem-loop(if miRNA)	--    GG         GC       G  UAUG      UACG   AA       G   AAUU  GCUGUGUGG  CACACGG CU    GGUCCA    GAU  UCCACAU G   ||||  |||||||||  ||||||| ||    ||||||    |||  |||||||   UUGG  CGGCACACC  GUGUGCC GA    CCGGGU    UUA  AGGUGUG G AA    AA         AA       G  ----      ----   --       C
Stem-loop sequence	AAUUGGGCUGUGUGGGCCACACGGGCUUAUGGGUCCAUACGGAUAAUCCACAUGGGCGUGUGGAAUUUGGGCCAGGCCGUGUGAACCACACGGCAAGGUUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017770332.1	ncRNA:24   GGCACACCGGGUGUGUCGGGUUAA   1   *|*|*||||*|||*|||||||||| targets:1369   ACAUCUGGCACACUCAGCCCAAUU   1392 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum DNA repair helicase XPD (LOC108469451), mRNA	DNA repair helicase XPD(LOC108469451)	coding protein	psRNATarget
XM_017775378.1	ncRNA:24   GGCACACCGGGUGUGUCGGGUUAA   1   *|*|*||||*|||*|||||||||| targets:1735   ACAUCUGGCACACUCAGCCCAAUU   1758 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum DNA repair helicase XPD (LOC108473677), transcript variant X2, mRNA	DNA repair helicase XPD(LOC108473677)	coding protein	psRNATarget
XM_017775377.1	ncRNA:24   GGCACACCGGGUGUGUCGGGUUAA   1   *|*|*||||*|||*|||||||||| targets:1730   ACAUCUGGCACACUCAGCCCAAUU   1753 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum DNA repair helicase XPD (LOC108473677), transcript variant X1, mRNA	DNA repair helicase XPD(LOC108473677)	coding protein	psRNATarget