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BaseInfo

ncRNA ID	ath-miRf11054-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	21
Mature sequence(if miRNA)	NA - UCUUUCUGCAAACGCCUUGGA - NA
Stem-loop(if miRNA)	U   AU     C                    U      -------------U    UCAU       A  UUU  AACCU UUUCUGCAAACGCCUUGGAU UUCUUU              GGCU    GUUGUUC U  |||  ||||| |||||||||||||||||||| ||||||              ||||    |||||||  AAA  UUGGA AAAGAUGUUUGUGGAACCUA AAGAAA              CCGA    UAAUAAG U A   CU     A                    C      UUUAUUCUACUUUU    ----       A
Stem-loop sequence	UUUUAUAACCUCUUUCUGCAAACGCCUUGGAUUUUCUUUUGGCUUCAUGUUGUUCAUUAGAAUAAUAGCCUUUUCAUCUUAUUUAAAGAACAUCCAAGGUGUUUGUAGAAAAAGGUUUCAAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001338213.1	ncRNA:21   AGGUUCCGCAAACGUCUUUCU   1   ||||||||||||||||||||| targets:6   UCCAAGGCGUUUGCAGAAAGA   26 Target Full Sequence	0.0	Arabidopsis thaliana Putative eukaryotic LigT mRNA	Putative eukaryotic LigT(AT3G16230)	coding protein	psRNATarget
NM_001338212.1	ncRNA:21   AGGUUCCGCAAACGUCUUUCU   1   ||||||||||||||||||||| targets:70   UCCAAGGCGUUUGCAGAAAGA   90 Target Full Sequence	0.0	Arabidopsis thaliana Putative eukaryotic LigT mRNA	Putative eukaryotic LigT(AT3G16230)	coding protein	psRNATarget
NM_001338222.1	ncRNA:21   AGGUUCCGCAAACGUCUUUCU   1   ||||||||||||||||||||| targets:6   UCCAAGGCGUUUGCAGAAAGA   26 Target Full Sequence	0.0	Arabidopsis thaliana Putative eukaryotic LigT mRNA	Putative eukaryotic LigT(AT3G16230)	coding protein	psRNATarget
NM_001338221.1	ncRNA:21   AGGUUCCGCAAACGUCUUUCU   1   ||||||||||||||||||||| targets:6   UCCAAGGCGUUUGCAGAAAGA   26 Target Full Sequence	0.0	Arabidopsis thaliana Putative eukaryotic LigT mRNA	Putative eukaryotic LigT(AT3G16230)	coding protein	psRNATarget
NM_001338219.1	ncRNA:21   AGGUUCCGCAAACGUCUUUCU   1   ||||||||||||||||||||| targets:70   UCCAAGGCGUUUGCAGAAAGA   90 Target Full Sequence	0.0	Arabidopsis thaliana Putative eukaryotic LigT mRNA	Putative eukaryotic LigT(AT3G16230)	coding protein	psRNATarget
NM_001338218.1	ncRNA:21   AGGUUCCGCAAACGUCUUUCU   1   ||||||||||||||||||||| targets:70   UCCAAGGCGUUUGCAGAAAGA   90 Target Full Sequence	0.0	Arabidopsis thaliana Putative eukaryotic LigT mRNA	Putative eukaryotic LigT(AT3G16230)	coding protein	psRNATarget
NM_001338220.1	ncRNA:21   AGGUUCCGCAAACGUCUUUCU   1   ||||||||||||||||||||| targets:6   UCCAAGGCGUUUGCAGAAAGA   26 Target Full Sequence	0.0	Arabidopsis thaliana Putative eukaryotic LigT mRNA	Putative eukaryotic LigT(AT3G16230)	coding protein	psRNATarget
NM_001338217.1	ncRNA:21   AGGUUCCGCAAACGUCUUUCU   1   ||||||||||||||||||||| targets:70   UCCAAGGCGUUUGCAGAAAGA   90 Target Full Sequence	0.0	Arabidopsis thaliana Putative eukaryotic LigT mRNA	Putative eukaryotic LigT(AT3G16230)	coding protein	psRNATarget
BT002751.1	ncRNA:21   AGGUUCCGCAAACGUCUUUCU   1   ||||*|||||||||||||||| targets:839   UCCAUGGCGUUUGCAGAAAGA   859 Target Full Sequence	1.0	Arabidopsis thaliana clone C104839 putative mammalian MHC III region protein G9a (At2g22740) mRNA, complete cds	NA	coding protein	psRNATarget
NM_201785.1	ncRNA:21   AGGUUCCGCAAACGUCUUUCU   1   ||||*|||||||||||||||| targets:964   UCCAUGGCGUUUGCAGAAAGA   984 Target Full Sequence	1.0	Arabidopsis thaliana SU(VAR)3-9 homolog 6 (SUVH6), mRNA	SU(VAR)3-9 homolog 6(SUVH6)	coding protein	psRNATarget
AY065374.1	ncRNA:21   AGGUUCCGCAAACGUCUUUCU   1   ||||*|||||||||||||||| targets:951   UCCAUGGCGUUUGCAGAAAGA   971 Target Full Sequence	1.0	Arabidopsis thaliana putative mammalian MHC III region protein G9a (At2g22740) mRNA, complete cds	NA	coding protein	psRNATarget
NM_179699.3	ncRNA:21   AGGUUCCGCAAACGUCUUUCU   1   ||||*|||||||||||||||| targets:1021   UCCAUGGCGUUUGCAGAAAGA   1041 Target Full Sequence	1.0	Arabidopsis thaliana SU(VAR)3-9 homolog 6 (SUVH6), mRNA	SU(VAR)3-9 homolog 6(SUVH6)	coding protein	psRNATarget