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BaseInfo

ncRNA ID	novel_gar_miR1128
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr8:89347260-89347342 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180715;SRR3180719
Length	22
Mature sequence(if miRNA)	62 - AAGGAGAAGAGUGAGUAGCCUG - 83
Stem-loop(if miRNA)	--   UU       -----G      -     -CA     AUCUGA   GGU  UAUUCAU      UCUUUA GGAUG   UCUUG      U   |||  |||||||      |||||| |||||   |||||   CCG  AUGAGUG      GGAAAU CCUAC   AGAGC      U GU   --       AGAAGA      A     CAA     CCCAUG
Stem-loop sequence	GGUUUUAUUCAUGUCUUUAGGAUGCAUCUUGAUCUGAUUGUACCCCGAGAAACCAUCCAUAAAGGAGAAGAGUGAGUAGCCUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017792084.1	ncRNA:22   GUCCGAUGAGUGAGAAGAGGAA   1   ||||=|*||||||||||||||| targets:3263   CAGGUUUCUCACUCUUCUCCUU   3284 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum uncharacterized LOC108487715 (LOC108487715), mRNA	uncharacterized LOC108487715(LOC108487715)	coding protein	psRNATarget
XM_017776234.1	ncRNA:22   GUCCGAUGAGUGAGAAGAGGAA   1   |||||||=|||||*|||||||| targets:1736   CAGGCUAUUCACUGUUCUCCUU   1757 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108474273 (LOC108474273), mRNA	uncharacterized LOC108474273(LOC108474273)	coding protein	psRNATarget
XM_017769329.1	ncRNA:22   GUCCGAUGAGUGAGAAGAGGAA   1   =||||||=|||||*|||||||| targets:2228   UAGGCUAUUCACUAUUCUCCUU   2249 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108468445 (LOC108468445), mRNA	uncharacterized LOC108468445(LOC108468445)	coding protein	psRNATarget
XM_017758209.1	ncRNA:22   GUCCGAUGAGUGAGAAGAGGAA   1   ==|||||=|||||*|||||||| targets:346   UGGGCUAUUCACUAUUCUCCUU   367 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108458813 (LOC108458813), mRNA	uncharacterized LOC108458813(LOC108458813)	coding protein	psRNATarget
XM_017773037.1	ncRNA:22   GUCCGAUGAGUGAGAAGAGGAA   1   ||*|=||||||||*|||||||| targets:308   CAAGUUACUCACUAUUCUCCUU   329 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108471417 (LOC108471417), mRNA	uncharacterized LOC108471417(LOC108471417)	coding protein	psRNATarget
XM_017756222.1	ncRNA:22   GUCCGAUGAGUGAGAAGAGGAA   1   |***||||||*||||||||||| targets:649   CCUUCUACUCCCUCUUCUCCUU   670 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum zinc finger CCCH domain-containing protein 53-like (LOC108457257), mRNA	zinc finger CCCH domain-containing protein 53-like(LOC108457257)	coding protein	psRNATarget