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BaseInfo

ncRNA ID novel_gar_miR1127
Species Gossypium arboreum
Class miRNA
Genome position Chr8:81272228-81272311 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180715
Length 21
Mature sequence(if miRNA) 64 - UUGAAUCUUGAUGAUGCUGCA - 84
Stem-loop(if miRNA) --                  U           CUAAGAG  U
  CGGCAUCGUCAAGAUUCA AGAAAAUUUUC       CC G
  |||||||||||||||||| |||||||||||       || U
  GUCGUAGUAGUUCUAAGU UCUUUUGAAAG       GG U
AC                  -           UUCCGUA  U
Stem-loop sequence CGGCAUCGUCAAGAUUCAUAGAAAAUUUUCCUAAGAGCCUGUUUGGAUGCCUUGAAAGUUUUCUUGAAUCUUGAUGAUGCUGCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017773455.1
ncRNA:21   ACGUCGUAGUAGUUCUAAGUU   1
  **||*|||||||||||||||*
targets:201   AACAUCAUCAUCAAGAUUCAU   221

2.0 PREDICTED: Gossypium arboreum uncharacterized LOC108471910 (LOC108471910), mRNA uncharacterized LOC108471910(LOC108471910) coding protein psRNATarget
XM_017781896.1
ncRNA:21   ACGUCG-UAGUAGUUCUAAGUU   1
  ||*|||-|||||||||||||||
targets:1887   UGAAGCCAUCAUCAAGAUUCAA   1908

3.0 PREDICTED: Gossypium arboreum cytochrome P450 714C2-like (LOC108479353), mRNA cytochrome P450 714C2-like(LOC108479353) coding protein psRNATarget