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BaseInfo

ncRNA ID novel_gar_miR1118
Species Gossypium arboreum
Class miRNA
Genome position Chr7:38545631-38545744 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180715;SRR1029586
Length 24
Mature sequence(if miRNA) 1 - AAUUUUUAACUGUAGAAAUGGAUG - 24
Stem-loop(if miRNA) --           CA          ----     -  UU     GA  U   U CG    U
  UCCAUUUUUAC  UUAAAAAUUG    GGCUA CG  AGAAU  GG ACA G  GCAU U
  |||||||||||  ||||||||||    ||||| ||  |||||  || ||| |  ||||
  AGGUAAAGAUG  AAUUUUUAAU    UCGAU GU  UUUUG  UC UGU C  UGUG C
GU           UC          UGUA     U  CU     -A  -   - AA    A
Stem-loop sequence UCCAUUUUUACCAUUAAAAAUUGGGCUACGUUAGAAUGAGGUACAUGCGGCAUUUCAGUGUAACUGUCUAGUUUUUCUGUUAGCUAUGUUAAUUUUUAACUGUAGAAAUGGAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017783891.1
ncRNA:24   GUAGGUAAAGAUGUCAAUUUUUAA   1
  =|||=|||||||||||||||||||
targets:859   UAUCUAUUUCUACAGUUAAAAAUU   882

0.0 PREDICTED: Gossypium arboreum nudix hydrolase 25 (LOC108480791), mRNA nudix hydrolase 25(LOC108480791) coding protein psRNATarget
XM_017752821.1
ncRNA:24   GUAGGUAAAGAUGUCAAUUUUUAA   1
  ||||=||||*|||*||||||||||
targets:2578   CAUCUAUUUAUACUGUUAAAAAUU   2601

2.5 PREDICTED: Gossypium arboreum uncharacterized LOC108454377 (LOC108454377), mRNA uncharacterized LOC108454377(LOC108454377) coding protein psRNATarget
XM_017782061.1
ncRNA:24   GUAGGUAAAGAUGUCAAUUUUUAA   1
  ||||=||||*|||*||||||||||
targets:2095   CAUCUAUUUGUACUGUUAAAAAUU   2118

2.5 PREDICTED: Gossypium arboreum F-box/kelch-repeat protein At3g06240-like (LOC108479450), transcript variant X7, mRNA F-box/kelch-repeat protein At3g06240-like(LOC108479450) coding protein psRNATarget
XM_017782054.1
ncRNA:24   GUAGGUAAAGAUGUCAAUUUUUAA   1
  ||||=||||*|||*||||||||||
targets:2095   CAUCUAUUUGUACUGUUAAAAAUU   2118

2.5 PREDICTED: Gossypium arboreum F-box/kelch-repeat protein At3g06240-like (LOC108479450), transcript variant X1, mRNA F-box/kelch-repeat protein At3g06240-like(LOC108479450) coding protein psRNATarget
XM_017782060.1
ncRNA:24   GUAGGUAAAGAUGUCAAUUUUUAA   1
  ||||=||||*|||*||||||||||
targets:2095   CAUCUAUUUGUACUGUUAAAAAUU   2118

2.5 PREDICTED: Gossypium arboreum F-box/kelch-repeat protein At3g06240-like (LOC108479450), transcript variant X6, mRNA F-box/kelch-repeat protein At3g06240-like(LOC108479450) coding protein psRNATarget
XM_017782059.1
ncRNA:24   GUAGGUAAAGAUGUCAAUUUUUAA   1
  ||||=||||*|||*||||||||||
targets:2095   CAUCUAUUUGUACUGUUAAAAAUU   2118

2.5 PREDICTED: Gossypium arboreum F-box/kelch-repeat protein At3g06240-like (LOC108479450), transcript variant X5, mRNA F-box/kelch-repeat protein At3g06240-like(LOC108479450) coding protein psRNATarget
XM_017782058.1
ncRNA:24   GUAGGUAAAGAUGUCAAUUUUUAA   1
  ||||=||||*|||*||||||||||
targets:2095   CAUCUAUUUGUACUGUUAAAAAUU   2118

2.5 PREDICTED: Gossypium arboreum F-box/kelch-repeat protein At3g06240-like (LOC108479450), transcript variant X4, mRNA F-box/kelch-repeat protein At3g06240-like(LOC108479450) coding protein psRNATarget
XM_017782064.1
ncRNA:24   GUAGGUAAAGAUGUCAAUUUUUAA   1
  ||||=||||*|||*||||||||||
targets:2074   CAUCUAUUUGUACUGUUAAAAAUU   2097

2.5 PREDICTED: Gossypium arboreum F-box/kelch-repeat protein At3g06240-like (LOC108479450), transcript variant X10, mRNA F-box/kelch-repeat protein At3g06240-like(LOC108479450) coding protein psRNATarget
XM_017754697.1
ncRNA:24   GUAGGUAAAGAUGUCAAUUUUUAA   1
  =|||=*|||||||*||||||||||
targets:1412   UAUCUUUUUCUACUGUUAAAAAUU   1435

2.5 PREDICTED: Gossypium arboreum uncharacterized protein DDB_G0271670 (LOC108456101), transcript variant X2, mRNA uncharacterized protein DDB_G0271670(LOC108456101) coding protein psRNATarget
XM_017754696.1
ncRNA:24   GUAGGUAAAGAUGUCAAUUUUUAA   1
  =|||=*|||||||*||||||||||
targets:1412   UAUCUUUUUCUACUGUUAAAAAUU   1435

2.5 PREDICTED: Gossypium arboreum uncharacterized protein DDB_G0271670 (LOC108456101), transcript variant X1, mRNA uncharacterized protein DDB_G0271670(LOC108456101) coding protein psRNATarget
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