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BaseInfo

ncRNA ID	novel_gar_miR1116
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr7:49704102-49704280 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180715
Length	24
Mature sequence(if miRNA)	1 - AUUUACUGUUUGAUCUAAUGCACA - 24
Stem-loop(if miRNA)	--UA     A               A      U                      GU   A        U  C  - AAUAUCAGAAUAA     CGUUA AUUAAAUAGUAAAUU AUCAUU CUGUUAAAAAUUUUAUUUAUUU  AUU UUAAAAAU GA CU G             C     ||||| ||||||||||||||| |||||| ||||||||||||||||||||||  ||| |||||||| || || |             C     GUAAU UAGUUUGUCAUUUAA UAGUAA GAUAAUUUUUAAAGUAGAUAAA  UGA AAUUUUUA CU GU A             A ACAC     C               C      -                      AU   C        U  A  A CAAGUAGUAACAG
Stem-loop sequence	UACGUUAAAUUAAAUAGUAAAUUAAUCAUUUCUGUUAAAAAUUUUAUUUAUUUGUAUUAUUAAAAAUUGACCUGAAUAUCAGAAUAACCAGACAAUGAUGAACAAUGAUCUAUUUUUAACAGUUAAAAUAGAUGAAAUUUUUAAUAGAAUGAUCAAUUUACUGUUUGAUCUAAUGCACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017752094.1	ncRNA:24   ACACGUAAUCUAGUUUGUCAUUUA   1   |*|*|=||||||||||*||||||| targets:1110   UAUACGUUAGAUCAAAGAGUAAAU   1133 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum universal stress protein PHOS32-like (LOC108453792), transcript variant X3, mRNA	universal stress protein PHOS32-like(LOC108453792)	coding protein	psRNATarget
XM_017762937.1	ncRNA:24   ACAC--GUAAUCUAGUUUGUCAUUUA   1   |*||--=||||*||||||*||||||| targets:1327   UUUGAUUAUUACAUCAAAGAGUAAAU   1352 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108463007 (LOC108463007), mRNA	uncharacterized LOC108463007(LOC108463007)	coding protein	psRNATarget
XM_017783598.1	ncRNA:24   ACACGUAA---UCUAGUUUGUCAUUUA   1   *****|||---|||||||||||||||| targets:51   AAACGAUUUACAGAUCAAACAGUAAAU   77 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum protein unc-50 homolog (LOC108480563), mRNA	protein unc-50 homolog(LOC108480563)	coding protein	psRNATarget