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BaseInfo

ncRNA ID novel_gar_miR1115
Species Gossypium arboreum
Class miRNA
Genome position Chr7:90656699-90656832 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180715
Length 24
Mature sequence(if miRNA) 1 - AUAGUAGAAAUGAAUGAAAUUUUU - 24
Stem-loop(if miRNA) --C         A    G   A   A        AA      -   GAAUAAC  GCAAUGACAUGUGGU
   AAUUUUAUU AUUU UAU AUU AAAAUUGG  UUUAUG ACG       UA               G
   ||||||||| |||| ||| ||| ||||||||  |||||| |||       ||
   UUAAAGUAA UAAA AUG UAA UUUUGAUC  AAAUAC UGC       GU               U
UUU         G    G   A   C        --      A   ---AGUC  ACUCCACGUGUACCG
Stem-loop sequence CAAUUUUAUUAAUUUGUAUAAUUAAAAAUUGGAAUUUAUGACGGAAUAACUAGCAAUGACAUGUGGUGUGCCAUGUGCACCUCAUGCUGACGUACAUAAACUAGUUUUCAAUAGUAGAAAUGAAUGAAAUUUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017757758.1
ncRNA:24   UUUUUAAAGUAAGUAAAGAUGAUA   1
  *|||||||=|||||||||||||||
targets:1540   CAAAAUUUUAUUCAUUUCUACUAU   1563

1.0 PREDICTED: Gossypium arboreum uncharacterized LOC108458388 (LOC108458388), transcript variant X1, mRNA uncharacterized LOC108458388(LOC108458388) coding protein psRNATarget
XM_017757759.1
ncRNA:24   UUUUUAAAGUAAGUAAAGAUGAUA   1
  *|||||||=|||||||||||||||
targets:1480   CAAAAUUUUAUUCAUUUCUACUAU   1503

1.0 PREDICTED: Gossypium arboreum uncharacterized LOC108458388 (LOC108458388), transcript variant X2, mRNA uncharacterized LOC108458388(LOC108458388) coding protein psRNATarget
XM_017775344.1
ncRNA:24   UUUUUAAAGUAAGUAAAGAUGAUA   1
  ===|||||=|||||||||||||||
targets:1621   GGGAAUUUUAUUCAUUUCUACUAU   1644

1.0 PREDICTED: Gossypium arboreum uncharacterized LOC108473657 (LOC108473657), mRNA uncharacterized LOC108473657(LOC108473657) coding protein psRNATarget
XM_017770777.1
ncRNA:24   UUUUUAAAGUAAGUAAAGAUGAUA   1
  ===|||||=|||||||||||||||
targets:1103   GGGAAUUUUAUUCAUUUCUACUAU   1126

1.0 PREDICTED: Gossypium arboreum uncharacterized LOC108469760 (LOC108469760), mRNA uncharacterized LOC108469760(LOC108469760) coding protein psRNATarget
XM_017784977.1
ncRNA:24   UUUUUAAAGUAAGUAAAGAUGAUA   1
  ===|||||=|||||||||||||||
targets:2297   GGGAAUUUUAUUCAUUUCUACUAU   2320

1.0 PREDICTED: Gossypium arboreum uncharacterized LOC108481906 (LOC108481906), transcript variant X5, mRNA uncharacterized LOC108481906(LOC108481906) coding protein psRNATarget
XM_017784974.1
ncRNA:24   UUUUUAAAGUAAGUAAAGAUGAUA   1
  ===|||||=|||||||||||||||
targets:2090   GGGAAUUUUAUUCAUUUCUACUAU   2113

1.0 PREDICTED: Gossypium arboreum uncharacterized LOC108481906 (LOC108481906), transcript variant X3, mRNA uncharacterized LOC108481906(LOC108481906) coding protein psRNATarget
XM_017784973.1
ncRNA:24   UUUUUAAAGUAAGUAAAGAUGAUA   1
  ===|||||=|||||||||||||||
targets:2087   GGGAAUUUUAUUCAUUUCUACUAU   2110

1.0 PREDICTED: Gossypium arboreum uncharacterized LOC108481906 (LOC108481906), transcript variant X2, mRNA uncharacterized LOC108481906(LOC108481906) coding protein psRNATarget
XM_017784978.1
ncRNA:24   UUUUUAAAGUAAGUAAAGAUGAUA   1
  ===|||||=|||||||||||||||
targets:2083   GGGAAUUUUAUUCAUUUCUACUAU   2106

1.0 PREDICTED: Gossypium arboreum uncharacterized LOC108481906 (LOC108481906), transcript variant X6, mRNA uncharacterized LOC108481906(LOC108481906) coding protein psRNATarget
XM_017784976.1
ncRNA:24   UUUUUAAAGUAAGUAAAGAUGAUA   1
  ===|||||=|||||||||||||||
targets:1975   GGGAAUUUUAUUCAUUUCUACUAU   1998

1.0 PREDICTED: Gossypium arboreum uncharacterized LOC108481906 (LOC108481906), transcript variant X4, mRNA uncharacterized LOC108481906(LOC108481906) coding protein psRNATarget
XM_017784972.1
ncRNA:24   UUUUUAAAGUAAGUAAAGAUGAUA   1
  ===|||||=|||||||||||||||
targets:1972   GGGAAUUUUAUUCAUUUCUACUAU   1995

1.0 PREDICTED: Gossypium arboreum uncharacterized LOC108481906 (LOC108481906), transcript variant X1, mRNA uncharacterized LOC108481906(LOC108481906) coding protein psRNATarget
XM_017778478.1
ncRNA:24   UUUUUAAAGUAAGUAAAGAUGAUA   1
  ||||=|||=|||||||||||=|||
targets:2475   AAAAGUUUUAUUCAUUUCUAUUAU   2498

2.5 PREDICTED: Gossypium arboreum 3beta-hydroxysteroid-dehydrogenase/decarboxylase-like (LOC108476304), transcript variant X1, mRNA 3beta-hydroxysteroid-dehydrogenase/decarboxylase-like(LOC108476304) coding protein psRNATarget
XM_017778479.1
ncRNA:24   UUUUUAAAGUAAGUAAAGAUGAUA   1
  ||||=|||=|||||||||||=|||
targets:2469   AAAAGUUUUAUUCAUUUCUAUUAU   2492

2.5 PREDICTED: Gossypium arboreum 3beta-hydroxysteroid-dehydrogenase/decarboxylase-like (LOC108476304), transcript variant X2, mRNA 3beta-hydroxysteroid-dehydrogenase/decarboxylase-like(LOC108476304) coding protein psRNATarget
XM_017787028.1
ncRNA:24   UUUUUAAAGUAAGUAAAGAUGAUA   1
  ||||*|||=|||=|||||||||||
targets:4354   AAAAUUUUUAUUUAUUUCUACUAU   4377

2.5 PREDICTED: Gossypium arboreum RNA polymerase II C-terminal domain phosphatase-like 1 (LOC108483565), transcript variant X1, mRNA RNA polymerase II C-terminal domain phosphatase-like 1(LOC108483565) coding protein psRNATarget
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