ncRNA ID | novel_gar_miR1107 |
Species | Gossypium arboreum |
Class | miRNA |
Genome position | Chr7:116260270-116260335 [+] |
Reference genome | Gossypium_arboreum_v1.0 |
Source | SRR3180715 |
Length | 24 |
Mature sequence(if miRNA) | 43 - UUGUGCUGACGUGGAUAAAACGCU - 66 |
Stem-loop(if miRNA) |
--                --       A  -  U   CGUUUUGUCCAUGUCA  ACAAAGC CU CC U   ||||||||||||||||  ||||||| || || C   GCAAAAUAGGUGCAGU  UGUUUUG GA GG A UC                CG       C  A  A |
Stem-loop sequence | CGUUUUGUCCAUGUCAACAAAGCACUCCUUCAAGGAAGCGUUUUGUGCUGACGUGGAUAAAACGCU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_017784438.1 |
|
2.5 | PREDICTED: Gossypium arboreum serine/threonine-protein phosphatase 7 long form homolog (LOC108481281), mRNA | serine/threonine-protein phosphatase 7 long form homolog(LOC108481281) | coding protein | psRNATarget | |||||||||
XM_017780527.1 |
|
2.5 | PREDICTED: Gossypium arboreum uncharacterized LOC108478102 (LOC108478102), mRNA | uncharacterized LOC108478102(LOC108478102) | coding protein | psRNATarget |