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BaseInfo

ncRNA ID novel_gar_miR1107
Species Gossypium arboreum
Class miRNA
Genome position Chr7:116260270-116260335 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180715
Length 24
Mature sequence(if miRNA) 43 - UUGUGCUGACGUGGAUAAAACGCU - 66
Stem-loop(if miRNA) --                --       A  -  U
  CGUUUUGUCCAUGUCA  ACAAAGC CU CC U
  ||||||||||||||||  ||||||| || || C
  GCAAAAUAGGUGCAGU  UGUUUUG GA GG A
UC                CG       C  A  A
Stem-loop sequence CGUUUUGUCCAUGUCAACAAAGCACUCCUUCAAGGAAGCGUUUUGUGCUGACGUGGAUAAAACGCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017784438.1
ncRNA:24   UCGCAAAAUAGGUGCAGUCGUGUU   1
  ||||||||=||||=||||||||||
targets:8   AGCGUUUUGUCCAUGUCAGCACAA   31

2.5 PREDICTED: Gossypium arboreum serine/threonine-protein phosphatase 7 long form homolog (LOC108481281), mRNA serine/threonine-protein phosphatase 7 long form homolog(LOC108481281) coding protein psRNATarget
XM_017780527.1
ncRNA:24   UCGCAAAAUAGGUGCAGUCGUGUU   1
  ||=|*|||=|||||*|||||||||
targets:90   AGUGCUUUGUCCACAUCAGCACAA   113

2.5 PREDICTED: Gossypium arboreum uncharacterized LOC108478102 (LOC108478102), mRNA uncharacterized LOC108478102(LOC108478102) coding protein psRNATarget