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BaseInfo

ncRNA ID novel_gar_miR1105
Species Gossypium arboreum
Class miRNA
Genome position Chr7:101047416-101047469 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR3180715
Length 19
Mature sequence(if miRNA) 1 - CGAUUCUCGGCAACGGAUA - 19
Stem-loop(if miRNA) --    -U        C  AU   UGUU
  CGAU  CUCGGCAA GG  ACC    C
  ||||  |||||||| ||  |||
  GCUA  GAGUUGUU CC  UGG    U
UA    UC        -  AC   UAUU
Stem-loop sequence CGAUUCUCGGCAACGGAUACCUGUUCUUUAUGGUCACCUUGUUGAGCUAUCGAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017753787.1
ncRNA:19   AUAGGCAACGGCUCUUAGC   1
  |||||||||||||||=|||
targets:1966   UAUCCGUUGCCGAGAGUCG   1984

1.5 PREDICTED: Gossypium arboreum uncharacterized LOC108455194 (LOC108455194), mRNA uncharacterized LOC108455194(LOC108455194) coding protein psRNATarget
XM_017753790.1
ncRNA:19   AUAGGCAACGGCUCUUAGC   1
  |||||||||||||||=|||
targets:1723   UAUCCGUUGCCGAGAGUCG   1741

1.5 PREDICTED: Gossypium arboreum uncharacterized LOC108455200 (LOC108455200), mRNA uncharacterized LOC108455200(LOC108455200) coding protein psRNATarget