Search result

BaseInfo

ncRNA ID	novel_gar_miR1102
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr6:29131126-29131212 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR3180715;SRR3180719;SRR3180720
Length	21
Mature sequence(if miRNA)	1 - UUAACUCUCUCCCUCAAAGGC - 21
Stem-loop(if miRNA)	--U    U     -      A          -   -UAU    AU    UAAC CUCUC CCUCAA GGCUAUUCUG GUA    GGGU  G    |||| ||||| |||||| |||||||||| |||    ||||    AUUG GAGAG GGAGUU CCGAUGAGGU CAU    CCUA  C GAU    C     U      G          U   UGUU    AA
Stem-loop sequence	UUAACUCUCUCCCUCAAAGGCUAUUCUGGUAUAUGGGUAUGCAAAUCCUUGUUACUUGGAGUAGCCGUUGAGGUGAGAGCGUUAUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017754868.1	ncRNA:21   CGGAAACUCCCUCUCUCAAUU   1   |||||||||||||||||||*= targets:777   GCCUUUGAGGGAGAGAGUUUG   797 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum DELLA protein RGL1-like (LOC108456273), mRNA	DELLA protein RGL1-like(LOC108456273)	coding protein	psRNATarget
XM_017759004.1	ncRNA:21   CGGAAACUCCCUCUCUCAAUU   1   **=|||||||||*|||||||| targets:375   AAUUUUGAGGGAUAGAGUUAA   395 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108459599 (LOC108459599), transcript variant X3, mRNA	uncharacterized LOC108459599(LOC108459599)	coding protein	psRNATarget
XM_017759003.1	ncRNA:21   CGGAAACUCCCUCUCUCAAUU   1   **=|||||||||*|||||||| targets:375   AAUUUUGAGGGAUAGAGUUAA   395 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108459599 (LOC108459599), transcript variant X2, mRNA	uncharacterized LOC108459599(LOC108459599)	coding protein	psRNATarget
XM_017759002.1	ncRNA:21   CGGAAACUCCCUCUCUCAAUU   1   **=|||||||||*|||||||| targets:375   AAUUUUGAGGGAUAGAGUUAA   395 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108459599 (LOC108459599), transcript variant X1, mRNA	uncharacterized LOC108459599(LOC108459599)	coding protein	psRNATarget