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BaseInfo

ncRNA ID	novel_gar_miR1098
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr11:49525279-49525368 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029588
Length	24
Mature sequence(if miRNA)	1 - UCAACUUGGAUAUCUAGUUGCUGA - 24
Stem-loop(if miRNA)	--               AGU   -   GAUAAAAAUA     UU       U   UCAACUUGGAUAUCU   UGC UGA          AGUUU  AAUUAGA A   |||||||||||||||   ||| |||          |||||  |||||||   AGUUGAACCUAUAGA   AUG ACU          UCAGA  UUAAUUU A AC               ---   U   ---------A     -U       A
Stem-loop sequence	UCAACUUGGAUAUCUAGUUGCUGAGAUAAAAAUAAGUUUUUAAUUAGAUAAAUUUAAUUUAGACUAUCAUGUAAGAUAUCCAAGUUGACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017793627.1	ncRNA:24   AGUCGUUGAUCUAUAGGUUCAACU   1   |*=|*||||||=|||||||||||| targets:828   UAGGGAACUAGGUAUCCAAGUUGA   851 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum DEAD-box ATP-dependent RNA helicase 41 (LOC108489240), transcript variant X4, mRNA	DEAD-box ATP-dependent RNA helicase 41(LOC108489240)	coding protein	psRNATarget
XM_017793626.1	ncRNA:24   AGUCGUUGAUCUAUAGGUUCAACU   1   |*=|*||||||=|||||||||||| targets:997   UAGGGAACUAGGUAUCCAAGUUGA   1020 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum DEAD-box ATP-dependent RNA helicase 41 (LOC108489240), transcript variant X3, mRNA	DEAD-box ATP-dependent RNA helicase 41(LOC108489240)	coding protein	psRNATarget
XM_017793625.1	ncRNA:24   AGUCGUUGAUCUAUAGGUUCAACU   1   |*=|*||||||=|||||||||||| targets:1059   UAGGGAACUAGGUAUCCAAGUUGA   1082 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum DEAD-box ATP-dependent RNA helicase 41 (LOC108489240), transcript variant X2, mRNA	DEAD-box ATP-dependent RNA helicase 41(LOC108489240)	coding protein	psRNATarget
XM_017793624.1	ncRNA:24   AGUCGUUGAUCUAUAGGUUCAACU   1   |*=|*||||||=|||||||||||| targets:1074   UAGGGAACUAGGUAUCCAAGUUGA   1097 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum DEAD-box ATP-dependent RNA helicase 41 (LOC108489240), transcript variant X1, mRNA	DEAD-box ATP-dependent RNA helicase 41(LOC108489240)	coding protein	psRNATarget
XM_017778920.1	ncRNA:24   AGUCGUUGAUCUAUAGGUUCAACU   1   **||*||=|*|||||||||||||* targets:780   GAAGAAAUUUGAUAUCCAAGUUGU   803 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum uncharacterized LOC108476650 (LOC108476650), mRNA	uncharacterized LOC108476650(LOC108476650)	coding protein	psRNATarget