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BaseInfo

ncRNA ID	novel_gar_miR1093
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr1:126886197-126886350 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029588
Length	24
Mature sequence(if miRNA)	131 - AAGGAAUACAGAUGACGUGGCGUC - 154
Stem-loop(if miRNA)	--                 -  A   C                                     AAAAAUCAAAUUC        CGCCACGUCAUCUGUAU CC UUU CAAUAGUUUUAUGCUACAUCAGUAUUCUUAUCUUGAA             AGGAUA   ||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||             |||||A   GCGGUGCAGUAGACAUA GG AAA GUUAUCAAAAUACGGUGUAGUCAUAAGAAUAGGACUU             UCCUAA CU                 A  -   U                                     ---------AAAA
Stem-loop sequence	CGCCACGUCAUCUGUAUCCAUUUCCAAUAGUUUUAUGCUACAUCAGUAUUCUUAUCUUGAAAAAAAUCAAAUUCAGGAUAAAAUCCUAAAAUUCAGGAUAAGAAUACUGAUGUGGCAUAAAACUAUUGUAAAGGAAUACAGAUGACGUGGCGUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017758885.1	ncRNA:24   CUGCGGUGCAGUAGACAUAAGGAA   1   |||||||||||||||||||*|||| targets:1362   GACGCCACGUCAUCUGUAUCCCUU   1385 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum enolase-like (LOC108459500), mRNA	enolase-like(LOC108459500)	coding protein	psRNATarget
XM_017758885.1	ncRNA:24   CUGCGGUGCAGUAGACAUAAGGAA   1   |||||||||||||||||||*|||| targets:1631   GACGCCACGUCAUCUGUAUCCCUU   1654 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum enolase-like (LOC108459500), mRNA	enolase-like(LOC108459500)	coding protein	psRNATarget
XM_017759563.1	ncRNA:24   CUGCGGUGCAGUAGACAUAAGGAA   1   |||||||||||||||||||*|||| targets:2363   GACGCCACGUCAUCUGUAUCCCUU   2386 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum L-type lectin-domain containing receptor kinase IX.1-like (LOC108460187), mRNA	L-type lectin-domain containing receptor kinase IX.1-like(LOC108460187)	coding protein	psRNATarget
XM_017756176.1	ncRNA:24   CUGCGGUGCAGUAGACAUAAGGAA   1   ||||=||||||||||||||*|||| targets:668   GACGUCACGUCAUCUGUAUCCCUU   691 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum uncharacterized LOC108457229 (LOC108457229), mRNA	uncharacterized LOC108457229(LOC108457229)	coding protein	psRNATarget
XM_017760169.1	ncRNA:24   CUGCGGUGCAGUAGACAUAAGGAA   1   *|=**|||*||||=|||||||||| targets:2141   CAUUACACUUCAUUUGUAUUCCUU   2164 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum transcription factor bHLH3 (LOC108460608), mRNA	transcription factor bHLH3(LOC108460608)	coding protein	psRNATarget