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BaseInfo

ncRNA ID novel_gar_miR1084
Species Gossypium arboreum
Class miRNA
Genome position Chr1:118986847-118986902 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029588
Length 24
Mature sequence(if miRNA) 1 - AUCCAGUUGGGCAUACUUUCUGCA - 24
Stem-loop(if miRNA) --   C GU      UA     UGCACA
  AUC A  UGGGCA  CUUUC      G
  ||| |  ||||||  |||||
  UAG U  ACUCGU  GAAAG      U
AG   A UG      GC     UAUAAU
Stem-loop sequence AUCCAGUUGGGCAUACUUUCUGCACAGUUAAUAUGAAAGCGUGCUCAGUUAGAUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017779710.1
ncRNA:24   ACGUCUUUCAUACGGGUUGACCUA   1
  ***|||||*|||||||||||||*|
targets:1977   AAGAGAAAAUAUGCCCAACUGGUU   2000

2.5 PREDICTED: Gossypium arboreum ABC transporter G family member 38 (LOC108477222), mRNA ABC transporter G family member 38(LOC108477222) coding protein psRNATarget