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BaseInfo

ncRNA ID novel_gar_miR1080
Species Gossypium arboreum
Class miRNA
Genome position Chr10:103087546-103087687 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029588;SRR1029586
Length 24
Mature sequence(if miRNA) 1 - AUUGGAAAGGGAUACAAAUGACGU - 24
Stem-loop(if miRNA) --           UU           C  UA  C A      C   G    CU    AAAAAU      CA
  GUCAUUUGUAU  CUUUCCAAUAA AA  UG C CUUCAG AUU UUAU  UGAA      UAAAUC  A
  |||||||||||  ||||||||||| ||  || | |||||| ||| ||||  ||||      ||||||
  CAGUAAACAUA  GAAAGGUUAUU UU  AC G GAGGUU UAA AGUA  AUUU      GUUUAG  C
UG           GG           C  GC  A C      A   A    AG    AAAGUU      UA
Stem-loop sequence GUCAUUUGUAUUUCUUUCCAAUAACAAUAUGCCACUUCAGCAUUGUUAUCUUGAAAAAAAUUAAAUCCAACAUGAUUUGUUGAAAUUUAGAAUGAAAAUAUUGGAGCGACACGUUCUUAUUGGAAAGGGAUACAAAUGACGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017758885.1
ncRNA:24   UGCAGUAAACAUAGGGAAAGGUUA   1
  |||||||*||||||||||||||||
targets:1637   ACGUCAUCUGUAUCCCUUUCCAAU   1660

1.0 PREDICTED: Gossypium arboreum enolase-like (LOC108459500), mRNA enolase-like(LOC108459500) coding protein psRNATarget
XM_017759563.1
ncRNA:24   UGCAGUAAACAUAGGGAAAGGUUA   1
  |||||||*||||||||||||||||
targets:2369   ACGUCAUCUGUAUCCCUUUCCAAU   2392

1.0 PREDICTED: Gossypium arboreum L-type lectin-domain containing receptor kinase IX.1-like (LOC108460187), mRNA L-type lectin-domain containing receptor kinase IX.1-like(LOC108460187) coding protein psRNATarget
XM_017786227.1
ncRNA:24   UGCAGUAAACAUAGGGAAAGGUUA   1
  =**||||||||*||||||||||||
targets:493   GAAUCAUUUGUCUCCCUUUCCAAU   516

1.5 PREDICTED: Gossypium arboreum myosin-2-like (LOC108483042), transcript variant X4, mRNA myosin-2-like(LOC108483042) coding protein psRNATarget
XM_017786226.1
ncRNA:24   UGCAGUAAACAUAGGGAAAGGUUA   1
  =**||||||||*||||||||||||
targets:1064   GAAUCAUUUGUCUCCCUUUCCAAU   1087

1.5 PREDICTED: Gossypium arboreum myosin-2-like (LOC108483042), transcript variant X3, mRNA myosin-2-like(LOC108483042) coding protein psRNATarget
XM_017786224.1
ncRNA:24   UGCAGUAAACAUAGGGAAAGGUUA   1
  =**||||||||*||||||||||||
targets:1124   GAAUCAUUUGUCUCCCUUUCCAAU   1147

1.5 PREDICTED: Gossypium arboreum myosin-2-like (LOC108483042), transcript variant X1, mRNA myosin-2-like(LOC108483042) coding protein psRNATarget
XM_017786225.1
ncRNA:24   UGCAGUAAACAUAGGGAAAGGUUA   1
  =**||||||||*||||||||||||
targets:1231   GAAUCAUUUGUCUCCCUUUCCAAU   1254

1.5 PREDICTED: Gossypium arboreum myosin-2-like (LOC108483042), transcript variant X2, mRNA myosin-2-like(LOC108483042) coding protein psRNATarget
XM_017758885.1
ncRNA:24   UGCAGUAAACAUAGGGAAAGGUUA   1
  |||||||*|||||||||||=||||
targets:1368   ACGUCAUCUGUAUCCCUUUUCAAU   1391

2.5 PREDICTED: Gossypium arboreum enolase-like (LOC108459500), mRNA enolase-like(LOC108459500) coding protein psRNATarget
XM_017764234.1
ncRNA:24   UGCA--GUAAACAUAGGGAAAGGUUA   1
  ||||--|*|||||||||=||||||||
targets:292   ACGUUCCUUUUGUAUCCUUUUCCAAU   317

2.5 PREDICTED: Gossypium arboreum transcription factor HBP-1b(c38)-like (LOC108464126), transcript variant X4, mRNA transcription factor HBP-1b(c38)-like(LOC108464126) coding protein psRNATarget
XM_017764236.1
ncRNA:24   UGCA--GUAAACAUAGGGAAAGGUUA   1
  ||||--|*|||||||||=||||||||
targets:295   ACGUUCCUUUUGUAUCCUUUUCCAAU   320

2.5 PREDICTED: Gossypium arboreum transcription factor HBP-1b(c38)-like (LOC108464126), transcript variant X6, mRNA transcription factor HBP-1b(c38)-like(LOC108464126) coding protein psRNATarget
XM_017764233.1
ncRNA:24   UGCA--GUAAACAUAGGGAAAGGUUA   1
  ||||--|*|||||||||=||||||||
targets:387   ACGUUCCUUUUGUAUCCUUUUCCAAU   412

2.5 PREDICTED: Gossypium arboreum transcription factor HBP-1b(c38)-like (LOC108464126), transcript variant X3, mRNA transcription factor HBP-1b(c38)-like(LOC108464126) coding protein psRNATarget
XM_017764232.1
ncRNA:24   UGCA--GUAAACAUAGGGAAAGGUUA   1
  ||||--|*|||||||||=||||||||
targets:396   ACGUUCCUUUUGUAUCCUUUUCCAAU   421

2.5 PREDICTED: Gossypium arboreum transcription factor HBP-1b(c38)-like (LOC108464126), transcript variant X2, mRNA transcription factor HBP-1b(c38)-like(LOC108464126) coding protein psRNATarget
XM_017764235.1
ncRNA:24   UGCA--GUAAACAUAGGGAAAGGUUA   1
  ||||--|*|||||||||=||||||||
targets:411   ACGUUCCUUUUGUAUCCUUUUCCAAU   436

2.5 PREDICTED: Gossypium arboreum transcription factor HBP-1b(c38)-like (LOC108464126), transcript variant X5, mRNA transcription factor HBP-1b(c38)-like(LOC108464126) coding protein psRNATarget
XM_017764231.1
ncRNA:24   UGCA--GUAAACAUAGGGAAAGGUUA   1
  ||||--|*|||||||||=||||||||
targets:411   ACGUUCCUUUUGUAUCCUUUUCCAAU   436

2.5 PREDICTED: Gossypium arboreum transcription factor HBP-1b(c38)-like (LOC108464126), transcript variant X1, mRNA transcription factor HBP-1b(c38)-like(LOC108464126) coding protein psRNATarget
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